Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00114 ATGAATGCTACTTTTTGTCATGTTCCCCCGGGTTTTAGGTTCCATCCCACAGATGAAGAGCTTGTTGACTACTACCTTAGGAAGAAAGTTGCATCAAGGAGGATTGACCTTGATGTCATTAAAGATGTTGACCTTTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGCCACAAGGATAAGAAATATCCAACTGGAACTCGCACAAATAGAGCAACTGCTGCAGGATTTTGGAAAGCAACAGGAAGAGACAAGGCAATCTATTCAAAGCATGACTTGATAGGAATGAGGAAAACCTTAGTCTTTTATAAAGGAAGAGCTCCAAATGGACAAAAATCAGATTGGATTATGCACGAGTATCGCCTTGAAACTGATGAAAATGCCACACCACAGACCCCTTTTATTTTTTATTTTGTATGGTTAAAGCAGGAAGAAGGATGGGTTGTGTGTAGGGTATTCAAGAAGAGAGTAACAACCATGCGTAAAGTGAGTGAGCATGACTCCCCTTGTTGGTATGAAGACCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAACAAACCTCTCAATCCAATTTGGTCTATCAACTTCCATATCCTTGCAAGAAAGAGCTTGATTTGCCATACCAATTGCCTAGGGATCAGTTTCTCCAGCTTCCACTTCTTGAGAGCCCAAAACTACTTCAATCTTCCACCACCATGGCACCATATGGTCTAGATCATCATGCAACTGCTCTGCTTCCCTCATCACTCATACAACAAGAAGATCAAAAACAGCAAAACTTTCAGGCAATGTTGTATAGCAATAATGAACAAGGTGCAGGGGTTGATCAAGTCACTGATTGGAGAGTGCTTGACAAGTTTGTTGCTTCACAACTCAGTCAAGATGCATGCAAAGAAGACAACAACAACAACAACATCTTTCATGGCACAGACAATGTACAAAATTTGGACAAACAAGAAATGTTGTTGGTGCCTGCAGCAGCAGAAATTAATGCATCAACATCAAACTCCAGCTGCTGTCCAATTGATTTGTGGAAATAG 1086 0.4061 MNATFCHVPPGFRFHPTDEELVDYYLRKKVASRRIDLDVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENATPQTPFIFYFVWLKQEEGWVVCRVFKKRVTTMRKVSEHDSPCWYEDQVSFMQDLDSPKQTSQSNLVYQLPYPCKKELDLPYQLPRDQFLQLPLLESPKLLQSSTTMAPYGLDHHATALLPSSLIQQEDQKQQNFQAMLYSNNEQGAGVDQVTDWRVLDKFVASQLSQDACKEDNNNNNIFHGTDNVQNLDKQEMLLVPAAAEINASTSNSSCCPIDLWK. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00114 361 ProSiteProfiles NAC domain profile. 8 169 IPR003441 GO:0003677|GO:0006355
Seca6g00114 361 SUPERFAMILY NAC domain 5 169 IPR036093 GO:0003677|GO:0006355
Seca6g00114 361 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 272 - -
Seca6g00114 361 FunFam NAC domain-containing protein 17 173 - -
Seca6g00114 361 Gene3D NAC domain 17 172 IPR036093 GO:0003677|GO:0006355
Seca6g00114 361 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00114 Seca-Chr6 3045113 3046789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00114 4 361 NAC Transcription Factor Family AT1G12260 54.865 2.54e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca6g00114 NAM 3.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00114 - - gmx:100809525 549.28