Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00113 ATGGCAATGATGGGAAAGATACTCTTGACACTGTTATTGTTGTCATCAATTTTCTCAATAGCCACATCCAAAAGAAGATCTTCCAGCAACAACCACAACATAGATTGGTGGTGCAACCAAACCCCACACCCTGAACCATGCAAATACTACATAAAACAAAGCCACCACCACTACCCTCACAAGCTCAAACACAAATCCCAATTCCGTGAAATCCTGATTCACTTGGCATTACAGAGAGCCGTTATCATGCAAAAGCAAGCACGTGATTTCGGCCAAAATTGGGTCACCAAGAAACAGAGATCCGTTTCCCGTGACTGTTTGAAACTCTATAGCAACACCGTTTTCCATCTCAACCGTACATTCCACGACCTCCATCTGAAGAAGAGGTGTTCACCGTTCGATGCGCAAACGTGGCTGAGCACTGCTCGAACGAACATTGAGATATGCCGAAACGGTGCGTCGGAACTGAGGATCCCAGATTTCATAGCACCCATTACGAGGAACAATGTGACAGAGATTATAAGCAATAGCTTATTCGTGAATTGGGGATTTGTGAAACATGAAGCGAGTGGTCATTACACGGAAGACATGTTTCCTAGATGGTTTTCGCCACATGAGAGGAGGCTTTTGCAGGCTTCTTCAGTGAAGGCTCATCTTGTGGTAGCGAAAGATGGTTCAGGGCATTTCAGAACAGTTCAAGGTGCTATTAATGCAGCGGCAAGGAGGAAGTTCAAAACGAGGTTTATTATATATGTGAAGAGAGGGGTTTATAGAGAGAATATTGAAGTTGATAAGACGAACGATAACATCATGCTGGTTGGTGATGGGATCAGATATACGATAATAACAAGTGGCAGGAGCGTTAAGCAAGGATTTACCACCTATAGCTCTGCAACTGCAGGAATTGATGGTCTTCACTTCATTGCACGTGGCATTACCTTCCAAAACACGGCGGGACCATTGAAGGGTCAAGCAGTGGCACTTCGATCAGCCTCTGATCTCTCTGTTTTCTACCGATGTGCCTTTGTGGGATACCAAGACACTCTCATGGTTCATGCACAGCGTCAATTTTACAGAGAATGTTACATCTATGGCACCGTTGACTTCATCTTTGGCAATGCTGCTGTGGTTTTCCAAAACTGCATGATTCTTGTCAGAAGGCCTTTAAATGGTCAAGCAAACATGATCACAGCACAAGGTAGAGATGACCCTTTTCAAAACACAGGGATTTCAATTCACAATTCTCAAATTAGGGCTGCTCCTGACCTCAAGCCCGTTCTTTCCAAATTCAACACTTTCTTGGGCCGCCCTTGGCAGAGATACTCAAGAGTTGTGGTCATGAAAACGTTCATGGATAGTTTGGTGAGCCCAATGGGCTGGTCTCCATGGGGAAATACTAATTTTGCTCAGAGTACTCTTTTTTATGGTGAGTATAAGAACTTTGGGCCTGGTTCATCTACAGCAAACAGGGTTCGATGGCCTGGTTTTCATGTTATAACAAGCCCAACTGAGGCATCGAGCTTCACTGTTGCTAACCTCCTTGCTGGACGCACATGGTTGCCTGCCACTGGTGTGCCATTCACTTCTGGCCTTTAA 1596 0.4486 MAMMGKILLTLLLLSSIFSIATSKRRSSSNNHNIDWWCNQTPHPEPCKYYIKQSHHHYPHKLKHKSQFREILIHLALQRAVIMQKQARDFGQNWVTKKQRSVSRDCLKLYSNTVFHLNRTFHDLHLKKRCSPFDAQTWLSTARTNIEICRNGASELRIPDFIAPITRNNVTEIISNSLFVNWGFVKHEASGHYTEDMFPRWFSPHERRLLQASSVKAHLVVAKDGSGHFRTVQGAINAAARRKFKTRFIIYVKRGVYRENIEVDKTNDNIMLVGDGIRYTIITSGRSVKQGFTTYSSATAGIDGLHFIARGITFQNTAGPLKGQAVALRSASDLSVFYRCAFVGYQDTLMVHAQRQFYRECYIYGTVDFIFGNAAVVFQNCMILVRRPLNGQANMITAQGRDDPFQNTGISIHNSQIRAAPDLKPVLSKFNTFLGRPWQRYSRVVVMKTFMDSLVSPMGWSPWGNTNFAQSTLFYGEYKNFGPGSSTANRVRWPGFHVITSPTEASSFTVANLLAGRTWLPATGVPFTSGL. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00113 531 Pfam Pectinesterase 219 516 IPR000070 GO:0030599|GO:0042545
Seca6g00113 531 SUPERFAMILY Pectin lyase-like 214 530 IPR011050 -
Seca6g00113 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 182 IPR035513 -
Seca6g00113 531 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Seca6g00113 531 Gene3D - 212 531 IPR012334 -
Seca6g00113 531 CDD PMEI-like_3 36 181 - -
Seca6g00113 531 FunFam Pectinesterase 212 531 - -
Seca6g00113 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 180 IPR035513 -
Seca6g00113 531 PANTHER PECTINESTERASE 17 521 - -
Seca6g00113 531 SMART PMEI_2 29 180 IPR006501 GO:0004857
Seca6g00113 531 Pfam Plant invertase/pectin methylesterase inhibitor 34 178 IPR006501 GO:0004857
Seca6g00113 531 NCBIfam pectinesterase inhibitor domain 7 180 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00113 Seca-Chr6 3005080 3008514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00113 27 531 Carbohydrate Esterase AT5G51500 60.624 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00113 K01051 - gmx:100807908 876.7