Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00106 ATGGAGGGCATTTCTTGTAAGCACCTTATCACATCCTTTCTCATAACAATTGTTGTTACTAGTTTCACAACACTACACTCTGTTGAAGCCATTGAAAAACAATACCAACAAGCCAACACACTCTTCATTAGAAGTTCTTGCAGTTCCACAACATATCCAAGGCTTTGTTATAGCTCCTTAGTAAAGCACGCAGACTCAATCCAAACAAACCGTGTTGTTCTAACAGGCACAGCCCTCAACGTGACTCTTGCATCTGCTAAATCAACCTCAGTTGTGATGTCAACACTTGCAAAAGGCAGAGGGTTGAAGCCAAGAGAGATTGCAGCCATGAAGGACTGTGTGGAAGAGCTGAGTGACTCAGTGGATGAACTCAGAAGGTCAATTGCTGAGATGAGTCATCTCAAGACATCCAATTTTGAACTAACAATGAGTGATGTGCAAACTTGGGTTAGTGCTGCTTTGACAGATGAAACAACATGCACTGATGGGTTCCAAGAGATAGCAAGTGGTAGTGGTACAAATGGTGACATTAAGACCACTGTGAGAGGGAAAATTGTGCAGGTAGCTCAATTGACTAGCAATGCCTTGGCTTTGATAAATCAGCTAGCCAATTCCCATGCTTAA 624 0.4247 MEGISCKHLITSFLITIVVTSFTTLHSVEAIEKQYQQANTLFIRSSCSSTTYPRLCYSSLVKHADSIQTNRVVLTGTALNVTLASAKSTSVVMSTLAKGRGLKPREIAAMKDCVEELSDSVDELRRSIAEMSHLKTSNFELTMSDVQTWVSAALTDETTCTDGFQEIASGSGTNGDIKTTVRGKIVQVAQLTSNALALINQLANSHA. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00106 207 NCBIfam pectinesterase inhibitor domain 8 202 IPR006501 GO:0004857
Seca6g00106 207 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 202 IPR035513 -
Seca6g00106 207 SMART PMEI_2 38 198 IPR006501 GO:0004857
Seca6g00106 207 Pfam Plant invertase/pectin methylesterase inhibitor 42 198 IPR006501 GO:0004857
Seca6g00106 207 CDD PMEI-like_3 45 204 - -
Seca6g00106 207 PANTHER PECTINESTERASE INHIBITOR-LIKE 13 198 - -
Seca6g00106 207 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 204 IPR035513 -
Seca6g00106 207 FunFam Pectinesterase inhibitor 3 38 203 - -
Seca6g00106 207 Coils Coil 107 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00106 Seca-Chr6 2808854 2809477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00106 9 199 Carbohydrate Esterase AT5G53370 30.612 2.62e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00106 - - gmx:100305537 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00106 6 2808854 2809477 Seca6g00106 6 2808854 2809477 ECH