LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g00101	ATGTCGTCGACCTCTCCACCGCCACGTTTTCCAAAGGTCGATCTCGCATCAGGGTCTTCGTCGCCGGTCTCCGCAAGAGCTAAGCAGCTCCAAAAAATTCCCCCAATCCAAAATCGACAAACCGCAACATTAGCCGATGAAGAGGAGGAGGAAGAGGAAGGTGAAGGTGCCAATTCTTCTTCCATCTTGCTTGCATCGTCTTTGGGGCTCAACCATATTCGAACGCGCTCCTCATCTTCGCCTCTTCGCTATTCTTCCTCGGTTGGCGCCCCTTCCTTCTTGAGAAAGGATGTTGTCACTGTTAATGTCGCCAAAACTAGATCCAAACCTTCACATCCAAAGGACATAGGGGAAAAAGGTCATTGGAGTCAATCCAAATCGATGAAAGCTCATTCACAGCTCCTTCCAGTGCTTGAGGGTAATCATGCAGCTTTTGCCAAAGAAATGCAATCCCCACGGTTTCAGGAAATACTACGACTCACAAGTGGACGTAAAAAAACACACCATGATATTAAAAGTTTTTCCCATGAACTTAACTCCAAAGGAGTTAGACCTTTTCCAATATGGAAACATCGCGCCCTTGGCCATTTAGAGGAAGTCATGGTGGCAGTTCGAGCTAAGTTTGAAAAATTAAAGAAAGAAGTTGATTCTGACTTGGGTGCTTTTGCTGGAGATTTGGTGGGCACTCTTGAAAAAATTTCAGGGTCTCAAACTGAATGGACAGAAAGGTTGGAGGATCTGTTGATTGTTGCTCGACAATGCACAAAGATGTCACCTGCTGAGTTTTGGGTCAAATGTGAAGCTATTGTTCAAAATCTTGATGACAAGCGCCAAGAATTACCAGTGGGGATCCTCAAGCAAGCACATACACGTCTATTATTTATTCTCACTCGGTGCACTCGTCTAGTTCAATTCCAAAAGGAAAGTGGCTATGAACAAGAGCATATTCTGGGTCTTCACCAACTCAGTGATCTTGGAGTATATCCAGAACAAATTTTGAAAGTTGCGGAACAGGCAGAGCAGAAATCCAGTATTCCACCTAGTCAGCATGAGATGGCTGAGAAACTGTTAAAAAAGTCACTTGGAAAAGGACAAGACAAATTGGTAACAAAACAAAATCAAGTGGACCATCATGTCGATGTTGCAATTGACAATTTGGAAGTTACTACAGCTAAAAGTGGTGAATCAACTCCTAGTAGCTATAGGATGTCTTCTTGGAGAAAGCTTCCATCTGCCGCTGAGAAAAAACGCCTTGAAATGGATCAGTTGGTAGTCAAAGATGAAAATACTGAAAATATGGATACTTTGCCATGCCATCCTGAACATTCACAGTCATCATCCAGAGCGCGAAAGGTTTCCTGGGGATTCTGGGGAGATCATCAAAATGTATCATATGAGGATTCAATGATCTGTAGGATTTGTGAGGTTGAAATACCAATCGTGCATGTGGAGGAGCATTCTCGAATATGCACAATAGCTGATAGATGTGATTTAAAAGGCTTAAATGTTAATGAACGACTTGAAAGAGTTTGTGAAACTATTGAGAGGATATTGGATTCATGGACACCCAAAAGCATTGATGCCCCTGGAGAAAGCTTCGAGGTTGTTAGAGTGTCAACATCAAGTATGCATGAAGAGTTCAATGAGTTATCTCTAGAAAGACATAACTTGTCTTGTAGATGCTCTGATGACATGCTTGAAGCTGACAATACTTTTGTTATGGATGATCTGAACCTTTCACATGAAATATCATGTGAAGCACGTATGTGTTTAAAATCCGATCATGGCACAAAAGTATCTTCAGCTGGAAGCTTGACGCCGAGATCACCATTGGTAACACCGCGAACTAGTCAAGTAGAAATGTTACTAAATGGAAGAAGAATAATATCTCAACTTGAGAGTTATGACCAGATAAATAAACTAGTTGAAATAGCTCGTGCCGTTGCAAATGTGAACAATTGTGACTATAGTGCATTGGAGTATATGCTTGATCGTTTGGAAGACCTGAAATACGCAATTCAAGACAGAAAAGTGGATGCACTTATACTGGAGACTTTTGGTCGACGAATAGAGAATCTTTTACAGGAGAAATATATATCTCTTTGTGGGCAGATAGATGATGAAAAGGTAGACTCACTGACCAGCATGGCTGATGAAGAGAGTTCAGTGGAAGATGATATAGTTCGTAGCCTTCGTGCTAGCCCAATTAACACTTGTTCTAAGGACCGAACCTCTATTGAAGACTTTGAAATAATAAAACCAATAAGTAGGGGTGCATTTGGACGAGTTTTTCTTGCCCGAAAAAGAGCAACTGGTGATTTATTTGCTATAAAGGTTTTGAAAAAGAAAGATATGATCCGTAAAAATGCAGTTCAAAGTATTTTGGCTGAGCGAGACATCCTTATATCTACTCGAAACCCTTTTGTGGTTCGATTTTTCTACTCGTTCACATGTAGGGAAAATCTTTATCTAGTTATGGAGTATTTAAATGGTGGAGATCTTTATTCTTTGTTGAGAAATCTAGGTTGCTTAGAAGAAGATATGGCCCGTGTATATATTGCAGAAGTTGTTCTTGCATTGGAGTATTTACATTCCTTAAATGTGATTCATAGAGACTTGAAGCCAGATAATTTATTGATTGGTCAAGATGGTCACATTAAGTTGACAGATTTCGGGCTCTCTAAGGTTGGTCTTATCAATAGTACAGATGATTTATCAGCGCCATCATTTTCCACTTATGGTTTCCTAGGAGATGATGAACCAAAACCTCAACATTCTTCAAAAAGGGAAGAACGTCGAAAAACTTCATTGGTTGGCACCCCAGATTATTTGGCACCTGAAATACTTCTTGGAATGGGACATGGTGCAACTGCAGATTGGTGGTCCGTGGGTGTCATACTTTATGAGCTGCTTGTGGGTATTCCACCATTCAATGCAGCACATCCACAGCAAATTTTTGATAACATAATTAACAGAGACATACAATGGCCCAACATTCCAGAGGAGATTAGCTATGAAGCATATGATTTGATGAATAAATTATTGAATGAAAATCCAGTCCAGAGATTAGGTGCAACAGGAGCTACGGAAGTTAAACGCCACGCTTTCTTTAAGGATATTAATTGGGATACTCTAGCAAGGCAGAAGGCTATGTTCATACCATCAGCTGAAGCTCTTGATACAAGTTATTTTATGAGTCGTTACATTTGGAATCCAGAGGATGAACATTGTGCTGGAGGTAGTGATTTTGACAACATTACTGAAACTTGCAGTAGTGGTTCTGGCAGCGATTTAATAGATGAAGATGGTGATGAATGTCGCAGTTTAGCAGAATTCAGTGGTCCAGCTCTTGAGGTGCAGTACTCATTTAGTAATTTTTCATTCAAGAACTTGTCACAACTAGCATCTATCAATTATGATTTGGTGATTAAGAACTCCAAGGAATCACTCGATGACTCCAACCCTTCTGTTTCGTGA	3477	0.4047	MSSTSPPPRFPKVDLASGSSSPVSARAKQLQKIPPIQNRQTATLADEEEEEEEGEGANSSSILLASSLGLNHIRTRSSSSPLRYSSSVGAPSFLRKDVVTVNVAKTRSKPSHPKDIGEKGHWSQSKSMKAHSQLLPVLEGNHAAFAKEMQSPRFQEILRLTSGRKKTHHDIKSFSHELNSKGVRPFPIWKHRALGHLEEVMVAVRAKFEKLKKEVDSDLGAFAGDLVGTLEKISGSQTEWTERLEDLLIVARQCTKMSPAEFWVKCEAIVQNLDDKRQELPVGILKQAHTRLLFILTRCTRLVQFQKESGYEQEHILGLHQLSDLGVYPEQILKVAEQAEQKSSIPPSQHEMAEKLLKKSLGKGQDKLVTKQNQVDHHVDVAIDNLEVTTAKSGESTPSSYRMSSWRKLPSAAEKKRLEMDQLVVKDENTENMDTLPCHPEHSQSSSRARKVSWGFWGDHQNVSYEDSMICRICEVEIPIVHVEEHSRICTIADRCDLKGLNVNERLERVCETIERILDSWTPKSIDAPGESFEVVRVSTSSMHEEFNELSLERHNLSCRCSDDMLEADNTFVMDDLNLSHEISCEARMCLKSDHGTKVSSAGSLTPRSPLVTPRTSQVEMLLNGRRIISQLESYDQINKLVEIARAVANVNNCDYSALEYMLDRLEDLKYAIQDRKVDALILETFGRRIENLLQEKYISLCGQIDDEKVDSLTSMADEESSVEDDIVRSLRASPINTCSKDRTSIEDFEIIKPISRGAFGRVFLARKRATGDLFAIKVLKKKDMIRKNAVQSILAERDILISTRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLEEDMARVYIAEVVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKVGLINSTDDLSAPSFSTYGFLGDDEPKPQHSSKREERRKTSLVGTPDYLAPEILLGMGHGATADWWSVGVILYELLVGIPPFNAAHPQQIFDNIINRDIQWPNIPEEISYEAYDLMNKLLNENPVQRLGATGATEVKRHAFFKDINWDTLARQKAMFIPSAEALDTSYFMSRYIWNPEDEHCAGGSDFDNITETCSSGSGSDLIDEDGDECRSLAEFSGPALEVQYSFSNFSFKNLSQLASINYDLVIKNSKESLDDSNPSVS.	1159

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g00101	1158	SUPERFAMILY	Protein kinase-like (PK-like)	746	1064	IPR011009	-
	Seca6g00101	1158	Pfam	Protein kinase domain	749	1037	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g00101	1158	SMART	serkin_6	749	1037	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g00101	1158	FunFam	probable serine/threonine protein kinase IREH1	747	836	-	-
	Seca6g00101	1158	CDD	STKc_MAST_like	755	1042	-	-
	Seca6g00101	1158	MobiDBLite	consensus disorder prediction	17	42	-	-
	Seca6g00101	1158	Gene3D	Transferase(Phosphotransferase) domain 1	833	1055	-	-
	Seca6g00101	1158	Coils	Coil	194	214	-	-
	Seca6g00101	1158	PANTHER	SERINE/THREONINE-PROTEIN KINASE	450	1112	-	-
	Seca6g00101	1158	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	868	880	IPR008271	GO:0004672\|GO:0006468
	Seca6g00101	1158	MobiDBLite	consensus disorder prediction	921	936	-	-
	Seca6g00101	1158	ProSiteProfiles	AGC-kinase C-terminal domain profile.	1038	1138	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Seca6g00101	1158	MobiDBLite	consensus disorder prediction	914	936	-	-
	Seca6g00101	1158	ProSiteProfiles	Protein kinase domain profile.	749	1037	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g00101	1158	Gene3D	Phosphorylase Kinase; domain 1	747	1064	-	-
	Seca6g00101	1158	MobiDBLite	consensus disorder prediction	1	60	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g00101	Seca-Chr6	2694090	2706662	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g00101	1	1157	AGC Kinase Gene Family	AT5G62310	63.887	0.0	1480

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_MAST	Seca6g00101		Pkinase	2.7e-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g00101	-		-	gmx:100817975	1853.18