Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00097 ATGGCTTACGCTGCAATGAAACCCACTAAACCCGGCTTGGAAGAGTCACAGGATCAGATCCACAAGATTAGAATCACCCTCTCCTCTAAGAATGTCAAGAATCTCGAGAAAGTTTGCTCCGACTTGATTCGTGGTGCCAAGGACAAGCGCCTCAGGGTCAAGGGACCTGTTAGAATGCCAACTAAAGTTCTTCACATCACCACTAGGAAATCCCCTTGTGGAGAAGGTACTTTTAGTTTAAATTTGTGCTTCAACTTCTCCATTTTGTTCTGTGCTTCTTGCTTGATGATGCCTCTCGCTTTAGGTACCAACACATGGGACAGATTTGAGCTGCGTGTGCACAAGAGAGTCATTGACCTCTACAGTTCTCCTGATGTGGTCAAGCAGATTACCTCCATTACAATTGAACCTGGTGTGGAGGTTGAAGTGACCATTGCAGATGCTTGA 447 0.4564 MAYAAMKPTKPGLEESQDQIHKIRITLSSKNVKNLEKVCSDLIRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTFSLNLCFNFSILFCASCLMMPLALGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00097 148 Hamap 30S ribosomal protein S10 [rpsJ]. 20 145 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca6g00097 148 SUPERFAMILY Ribosomal protein S10 102 145 IPR036838 -
Seca6g00097 148 Gene3D Ribosomal protein S10 domain 7 147 IPR036838 -
Seca6g00097 148 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 15 147 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca6g00097 148 SUPERFAMILY Ribosomal protein S10 22 77 IPR036838 -
Seca6g00097 148 SMART Ribosomal_S10_2 24 144 IPR027486 -
Seca6g00097 148 ProSitePatterns Ribosomal protein S10 signature. 46 61 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca6g00097 148 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca6g00097 148 PRINTS Ribosomal protein S10 family signature 105 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca6g00097 148 Pfam Ribosomal protein S10p/S20e 103 144 IPR027486 -
Seca6g00097 148 Pfam Ribosomal protein S10p/S20e 24 75 IPR027486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00097 Seca-Chr6 2493438 2494511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00097 1 148 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 73.649 2.01e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00097 K02969 - twl:120003430 224.942