Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00091 ATGCAGGGTTTTGGAAAGCAACAGGGAGAGACAAGTGCATTAATTAGGAATAGCTACAAGAAGATTGGAATGAGAAAAGCCCTTGTCTTCTACAAAGGCAGAGCTCCTCGTGGACAAAAGATTGATTGGATCATGCATGAGTACCGCCTTGAAGATGGCAATGATCCTCGAGAAAATGCTAATGTATGCATGTCTCTCTCTCACAACAACCTCCACGAAGATGGTTGGGTGGTATGCAGGGTGTTCAAGAAGAAGAACCTATTTAAGATTGTAAATGAAGGTGGCTCCACACACAATCCAGACCAACAAATCAACAACTCCTCAAGCACCAATTCCCGCTCCTTCATGCACAGAAAAAACCAATACTTGCTGCATCAACAACAAAACCCTAGGAACCCGTCAGGGTTTGAGTTTTATAAGCCTGAGCTTGCTCTCCACTACCCACATTTACAAAACCCTCAATAG 465 0.4366 MQGFGKQQGETSALIRNSYKKIGMRKALVFYKGRAPRGQKIDWIMHEYRLEDGNDPRENANVCMSLSHNNLHEDGWVVCRVFKKKNLFKIVNEGGSTHNPDQQINNSSSTNSRSFMHRKNQYLLHQQQNPRNPSGFEFYKPELALHYPHLQNPQ. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00091 154 ProSiteProfiles NAC domain profile. 1 84 IPR003441 GO:0003677|GO:0006355
Seca6g00091 154 Pfam No apical meristem (NAM) protein 3 50 IPR003441 GO:0003677|GO:0006355
Seca6g00091 154 MobiDBLite consensus disorder prediction 93 113 - -
Seca6g00091 154 SUPERFAMILY NAC domain 14 84 IPR036093 GO:0003677|GO:0006355
Seca6g00091 154 Gene3D NAC domain 1 89 IPR036093 GO:0003677|GO:0006355
Seca6g00091 154 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00091 Seca-Chr6 2403031 2403610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00091 3 148 NAC Transcription Factor Family AT4G10350 56.579 8.10e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca6g00091 NAM 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00091 - - gmx:100804181 229.565