Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00090 ATGGGTTCTTCTAATGGTGGTGTGCCTCCGGGATTTAGATTTCATCCAACGGATGAAGAATTGCTTCATTACTACTTGAAGAAGAAGGTGTCCTTTCAGAAGTTTGATATGGATGTTATTAGAGAAGTTGACTTGAACAAGATGGAGCCTTGGGACTTGCAAGTGTCTGTTTATATTTTTCATGATTATTATATGTTATACACAGAGAGATGTAGAATTGGATCAACTCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGATAGGAAGTACCCAACAGGATCAAGGACTAACAGAGCAACAAATGCAGGGTTTTGGAAAGCAACAGGGAGAGACAAGTGCATTAGGAACAGCTACAAGAAGATTGGAATGAGAAAAACCCTTGTCTTCTACAAAGGCAGAGCTCCTCATGGACAAAAGACTGATTGGATCATGCATGAGTATCGCCTCGAAGATGGCAATGATCCTCAAGTAAATGCCAATGAAGACGGTTGGGTGGTATGCAGGGTGTTCAAGAAGAAGAACCTATTTAAGATTGGAAATGAAGGTGGCTCCACACACAATCCAGAGCAACAAATCAACAACTCCTCAGGCACTAATGCCCGCTCCTTCATGCACAGAGAAAACCAATACTTGCTACATCAACAACAAAACCCTAGGAACCCGTCAGGGTTTGAGCTTGATAAGCCTGAGCTTGCTCTCCACTACCCACATTTGCAAAACCCTCAATACTCGCTCTTCCAATCTCAACCCCTTCTTCAAACCCACAAACCGTTGGTTTATGACTACTCATATGCGTCATCTCTACCCTCTGAGCCCCCTGTCATAGCAAAACAGCTCATGACAAACCCTAGAGACTGTGAGAGTGGTAGTGATGGTCTGAGATACCAAGTTTCAGAATCTGGCATGGAAGTTGGTTCATGTGAACCACCTCAAGAAATAGGTGGTGGAAGAGGTGAAGGAATGAACGAATGGGGCGTGCTTGATAGGCTAGTGACCTCTCATCTTGGAAATGAAGACTCAACCAAAGGGGTTAGATTTGATGATGGAAATACACAGTCTGTTCATCAAATTAACCAACTTTCATTGCGGGGAGAGATGGACTTTTGGGCTTATGGAAAACAATGA 1128 0.4317 MGSSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQVSVYIFHDYYMLYTERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPQVNANEDGWVVCRVFKKKNLFKIGNEGGSTHNPEQQINNSSGTNARSFMHRENQYLLHQQQNPRNPSGFELDKPELALHYPHLQNPQYSLFQSQPLLQTHKPLVYDYSYASSLPSEPPVIAKQLMTNPRDCESGSDGLRYQVSESGMEVGSCEPPQEIGGGRGEGMNEWGVLDRLVTSHLGNEDSTKGVRFDDGNTQSVHQINQLSLRGEMDFWAYGKQ. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00090 375 ProSiteProfiles NAC domain profile. 8 173 IPR003441 GO:0003677|GO:0006355
Seca6g00090 375 Gene3D NAC domain 17 178 IPR036093 GO:0003677|GO:0006355
Seca6g00090 375 Pfam No apical meristem (NAM) protein 9 150 IPR003441 GO:0003677|GO:0006355
Seca6g00090 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 228 - -
Seca6g00090 375 FunFam Nac domain-containing protein 86 17 176 - -
Seca6g00090 375 SUPERFAMILY NAC domain 7 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00090 Seca-Chr6 2372940 2376288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00090 1 369 NAC Transcription Factor Family AT1G33280 55.615 3.04e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca6g00090 NAM 1.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00090 - - gmx:100804181 660.218