Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00088 ATGTCCATCATCACAGAGGAAGTTCAATCTCAATCTGAAGGCCAAGGCAGTGCACCCGGCCCATCCTCAAAACGGGGCTCCGGGTCCAGGAGGAAGCGTGACTCAGCATTATTCCGTTTCCATGGGGTGCGAAAACGCAGCTGGGGACGCTACGTTTCGGAGATAAGGTTGCCGGGTCAGAAAACCCGGATATGGCTCGGGTCATTCGGGTCAGCGGAAATGGCTGCTCGTGCATATGACTGTGCAGCTTTCTTCTTGAAAGGAAACTCTGCCACCCTCAATTTCCCTGACCTCGTTGACTCACTGCCTCGCCCTCTTTCCTCATCAAGAAGAGACATTCAATCTGCTGCTTCTAAAGCCGCTCTTCAACTGCTTCACCAACCAAAAACAGAGGATGACAGTTCCAATTCCATGGAACAGCAGGAAGAAGACTCCATCTGGACGACGTCGTTTGATGCTCCTCTAATGAGCCCACTTAGGGTGGATTCCACTTTTGGAGATTTGACATGGAGCGAAGTATTTAATTTCAATGATGACATTCTCATGCACCTCGCATCCACATCCACTCTTCTTTAG 576 0.5017 MSIITEEVQSQSEGQGSAPGPSSKRGSGSRRKRDSALFRFHGVRKRSWGRYVSEIRLPGQKTRIWLGSFGSAEMAARAYDCAAFFLKGNSATLNFPDLVDSLPRPLSSSRRDIQSAASKAALQLLHQPKTEDDSSNSMEQQEEDSIWTTSFDAPLMSPLRVDSTFGDLTWSEVFNFNDDILMHLASTSTLL. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00088 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 143 - -
Seca6g00088 191 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Seca6g00088 191 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Seca6g00088 191 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Seca6g00088 191 MobiDBLite consensus disorder prediction 1 34 - -
Seca6g00088 191 FunFam Ethylene-responsive transcription factor 2 39 97 - -
Seca6g00088 191 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Seca6g00088 191 CDD AP2 39 98 IPR001471 GO:0003700|GO:0006355
Seca6g00088 191 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Seca6g00088 191 Pfam AP2 domain 40 88 IPR001471 GO:0003700|GO:0006355
Seca6g00088 191 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Seca6g00088 191 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00088 Seca-Chr6 2274529 2275104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00088 29 121 AP2-EREBP Transcription Factor Family AT5G11590 59.574 2.94e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca6g00088 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00088 K09286 - gmx:100783790 189.504