Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00075 ATGACTCCAGTTAATTTGGCAGGGCAGTTTGGTGACACCACATACACGAAGGTGTTTGTTGGAGGATTGGCTTGGGAGACACAAAAAGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTCCGCGAACCAGAAGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCTGTGATCGACGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTTCAGAGATCTAAGCCTTCAACACCAAAGCATGGAGGAGGAGGAGGGAGGAACTTTAGGGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGTGGGATCAGCTTTTCCTTCAGCAACAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTTCTTACTCGCCAGATTACACATACCCTACGGTTTGTACCTATTTTGCTTTTGCTTTTTCTTTCTCATCTGCTATTAATATCTTTTACTTAGGATCCGTTTCCAAGTATAACTTTTAG 576 0.4392 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNFRVMGSFQTGFGGVGSAFPSATTFPHYAIQQGIPYNVYGYSSYSPDYTYPTVCTYFAFAFSFSSAINIFYLGSVSKYNF. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00075 191 SMART rrm1_1 17 89 IPR000504 GO:0003723
Seca6g00075 191 Gene3D - 6 113 IPR012677 -
Seca6g00075 191 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Seca6g00075 191 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Seca6g00075 191 PANTHER BOULE-RELATED 6 158 - -
Seca6g00075 191 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Seca6g00075 191 SUPERFAMILY RNA-binding domain, RBD 12 116 IPR035979 GO:0003676
Seca6g00075 191 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00075 Seca-Chr6 1774608 1778366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00075 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 3.81e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00075 - - vum:124847527 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00075 6 1774608 1778366 Seca6g00075 6 1774608 1778366 ECH