Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00073 ATGTCCCTCTCTGGTGACATTTTCCCATCACTCTCAGTTCTTCAGAGCCTGCAGGTTCTGTCACTACCATCCAATTTAATTTCTGGTAAGCTTCCATCAGAAATAAGTAGCTGTGCCAACCTCAGAGTCTTGAATCTAACAGGGAATCAGCTGGTTGGACCAATCCCAGACTTGTCTATGCTGAGAAACCTGCAGGTTCTTGATCTTTCAGCAAACTACTTCTCTGGCAGAATCCCCAGTTGGGTGGGGAATCTAACTGGACTGGTTTCACTTGGTCTTGGGGAAAATGAATACACTGAGGGTGAGATTCCAGAGACTCTTGGAAATCTGAAGAACTTGACCTGGCTTTATCTTGGTGGTTCCCATTTGATAGGAGACATTCCTGAATCAATATATGAAATGAAGGCATTGGAGACACTGGACATTTCAAGAAACAAGATCTCTGGAAAACTCTCCAGATCAATTTCCAAGTTAAAGAATCTTTACAAGATTGAACTCTTCTCAAATAATTTGACAGGAGAAGTCCCAGCTGAGCTAGCAAACCTCACCAAGCTGCAGGAGATTGACCTTTCTGCAAACAATATGTATGGTAGGTTGCCAGAGGAAATTGGCAATATGAAGAACTTGGTTGTTTTTCAACTATATGAAAACAGCTTTTCTGGAGAACTTCCTGCTGGATTTGGGGATATGCAACATCTCAATGGGTTCTCAATATATAGAAACAACTTTACTGGGAGAATTCCAGAAAATTTTGGCCGATTTTCACCACTTGAAAGTATTGACATATCTGAGAATCAATTTTCAGGTGATTTCCCAAAGTTCTTGTGTGAAAGCAGGAAGTTGAGATTTTTGCTTGCATTGCAAAACAATTTTTCTGGGAGTTTTCCTGAGTCTTATGGTACATGCAAATCTCTAGAGAGATTTAGGATCAGTGGAAACCACTTATCTGGGAAAATTCCAGACAAGGTTTGGGCACTTCCATATGTAAAAATAATTGATTTTGGTTACAATGATTTCACTGGTGAGGTATCTTCAGAAATTGGGTTTTCTACTAGCTTAAGTCAGATAGTTTTGATAAACAACAGGTTTTCAGGTAAGCTCCCATCAGAAATTGGCAAGCTGGTGAACTTGGAGAAGCTTTACTTGAATAACAATAATTTCTCTGGTGAAATACCACCTGAAATGGGATCTTTGAAGCAGCTATCCTCTTTGCATCTAGAAGAGAATTCATTAACTGGATCAATACCCATAGAACTGGGTCATTGTGCAAGGCTGGTGGACTTGAACCTTGCTTGGAATTCTCTATCTGGAAATATCCCCCAGTCAGTTTCACTTATGAACTCATTGAACTCTCTTAATATATCTGGAAACAAACTTACAGGTTCTATTCCAGATAATTTAGAGACAATGAAACTAAGCTCAGTGGATTTCTCTGAAAACCTTCTTTCTGGGAGAATTCCATCTGGTCTTTTTATTATTGGTGGAGAGAAAGCTTTTCTTGGAAACAAGGGACTGTGTGTTGAGGAAAACCTAAAACCTTCCATGAATTCTGATTTGAAGTTTTGTGGAAAAAATCATGGTCAGACAAGGGTCTTTGCTTATAAATTTGTCTTGCTCTTTTTCACTGCTTCTGTCTTTGTTGTTATTTTAGCTGGGCTGCTGTTTTTTAGTTGTAGGAGCCTCAAACATGATGCTGATAAAAACTTAGAAAGTCAAAAGGAAGCGCGTCAAAAATGGAAACTTGCATCTTTCCACCAAGTAGATATTGATGCTGATGAAATATGTAATTTGGATGAAGATAATTTAATAGGAAGTGGTGGTACAGGAATGGTTTATAGAGTGGAATTGAGGAAAAATGGTGGCACAGTGGCTGTAAAGCAGCTGCAGAAAGGAGATGGTGTGAAGATTTTAGCTGCAGAGATGGAGATTTTGGGGCAGATTAGGCATAGAAATATACTTAAACTTTATGCTTGTTTACTTAAAGGAGGTTCAAACCTCTTAGTGTTTGAGTACATGCCAAATGGTAATCTTTTTCACGCTCTTCACAGAGAGAAAAAAGATGGGAATCCAGAATTGGATTGGAACAAAAGGTATAAAATTGCTCTAGGAGCTGCAAAAGGAATTGCCTATTTACACCATGACTGTTCTCCACCAATAATTCACAGGGATATAAAATCCAGCAACATTTTGCTTGATGAGGATTATGAGCCAAAAATTGCTGATTTTGGTATTGCAAGGTTTGCAGAAAAATCTGATAAGCAGCTGAGTTATAGCTGTCTTGCCGGCACACATGGTTATATTGCTCCAGAACTTGCGTATACAATTGACATTACTGAAAGGAGTGATGTCTATAGCTTTGGAGTGGTGCTATTAGAATTAGTGTCCGGCAGAGAACCTGTTGAAGAGGATTATGGAGAAGCAAAGGATATTGTTTATTGGGTTTCTACACATCTGAATGGCCGTGAAAGTATTGTCAACATTCTTGATGATAGAGTGGCATTGGAGTGTGCTGAAGATATGATAAAAGTGTTGAAGATAGCTATTAAGTGCACCACTAAGCTTCCATCTTTACGCCCTACCATGAGAGAGGTTGTCAAGATGCTTATTGGTGCTGAACCTTGCACATTGAAATCTAATTACTGCGATCTTGACAATGATGCCAAGGATTTTCTCTAG 2676 0.3898 MSLSGDIFPSLSVLQSLQVLSLPSNLISGKLPSEISSCANLRVLNLTGNQLVGPIPDLSMLRNLQVLDLSANYFSGRIPSWVGNLTGLVSLGLGENEYTEGEIPETLGNLKNLTWLYLGGSHLIGDIPESIYEMKALETLDISRNKISGKLSRSISKLKNLYKIELFSNNLTGEVPAELANLTKLQEIDLSANNMYGRLPEEIGNMKNLVVFQLYENSFSGELPAGFGDMQHLNGFSIYRNNFTGRIPENFGRFSPLESIDISENQFSGDFPKFLCESRKLRFLLALQNNFSGSFPESYGTCKSLERFRISGNHLSGKIPDKVWALPYVKIIDFGYNDFTGEVSSEIGFSTSLSQIVLINNRFSGKLPSEIGKLVNLEKLYLNNNNFSGEIPPEMGSLKQLSSLHLEENSLTGSIPIELGHCARLVDLNLAWNSLSGNIPQSVSLMNSLNSLNISGNKLTGSIPDNLETMKLSSVDFSENLLSGRIPSGLFIIGGEKAFLGNKGLCVEENLKPSMNSDLKFCGKNHGQTRVFAYKFVLLFFTASVFVVILAGLLFFSCRSLKHDADKNLESQKEARQKWKLASFHQVDIDADEICNLDEDNLIGSGGTGMVYRVELRKNGGTVAVKQLQKGDGVKILAAEMEILGQIRHRNILKLYACLLKGGSNLLVFEYMPNGNLFHALHREKKDGNPELDWNKRYKIALGAAKGIAYLHHDCSPPIIHRDIKSSNILLDEDYEPKIADFGIARFAEKSDKQLSYSCLAGTHGYIAPELAYTIDITERSDVYSFGVVLLELVSGREPVEEDYGEAKDIVYWVSTHLNGRESIVNILDDRVALECAEDMIKVLKIAIKCTTKLPSLRPTMREVVKMLIGAEPCTLKSNYCDLDNDAKDFL. 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00073 891 Gene3D Ribonuclease Inhibitor 153 234 IPR032675 -
Seca6g00073 891 FunFam Leucine-rich receptor-like protein kinase family protein 587 671 - -
Seca6g00073 891 ProSitePatterns Protein kinases ATP-binding region signature. 603 626 IPR017441 GO:0005524
Seca6g00073 891 Pfam Leucine rich repeat 136 194 IPR001611 GO:0005515
Seca6g00073 891 Pfam Leucine rich repeat 62 123 IPR001611 GO:0005515
Seca6g00073 891 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 134 869 - -
Seca6g00073 891 ProSiteProfiles Leucine-rich repeat profile. 40 62 IPR001611 GO:0005515
Seca6g00073 891 SMART serkin_6 597 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00073 891 Gene3D Ribonuclease Inhibitor 235 516 IPR032675 -
Seca6g00073 891 Pfam Protein kinase domain 599 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00073 891 FunFam leucine-rich repeat receptor-like protein kinase TDR 672 879 - -
Seca6g00073 891 Gene3D Ribonuclease Inhibitor 1 58 IPR032675 -
Seca6g00073 891 Gene3D Transferase(Phosphotransferase) domain 1 672 881 - -
Seca6g00073 891 SUPERFAMILY RNI-like 166 489 - -
Seca6g00073 891 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 83 175 - -
Seca6g00073 891 SMART LRR_typ_2 398 422 IPR003591 -
Seca6g00073 891 SMART LRR_typ_2 134 158 IPR003591 -
Seca6g00073 891 SMART LRR_typ_2 14 38 IPR003591 -
Seca6g00073 891 SMART LRR_typ_2 374 397 IPR003591 -
Seca6g00073 891 SMART LRR_typ_2 182 206 IPR003591 -
Seca6g00073 891 SMART LRR_typ_2 446 470 IPR003591 -
Seca6g00073 891 SMART LRR_typ_2 61 85 IPR003591 -
Seca6g00073 891 CDD STKc_IRAK 603 868 - -
Seca6g00073 891 Gene3D Phosphorylase Kinase; domain 1 560 671 - -
Seca6g00073 891 FunFam Receptor-like protein kinase HSL1 208 515 - -
Seca6g00073 891 ProSiteProfiles Protein kinase domain profile. 597 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00073 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 719 731 IPR008271 GO:0004672|GO:0006468
Seca6g00073 891 SUPERFAMILY Protein kinase-like (PK-like) 594 868 IPR011009 -
Seca6g00073 891 SUPERFAMILY L domain-like 4 233 - -
Seca6g00073 891 Gene3D Ribonuclease Inhibitor 59 152 IPR032675 -
Seca6g00073 891 Pfam Leucine Rich Repeat 376 394 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00073 Seca-Chr6 1746365 1749650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00073 1 878 Receptor kinase-like Gene Family AT1G72180 57.770 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca6g00073 Pkinase 7.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00073 - - gmx:100789704 1506.12