Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00071 ATGGCTTTTCTCCTTAACCCCTCCTTCTGCTACCTCTTTATTATTTCCCTGTACTTCCTTTCTTCTCTTCCAATCATAAATACACTTTCAACTGTTTCCATTTCTGAAACTTCCAACCAAACATTTATTTGTGCCTTACAACACCCAAACCAACAAGGACAGTCAAATCTTAACTCTACTAGCTTCCCTCCTGGTGGTATTGGACTTCAAATAAATCCCAATGTTTCCTACTCTGAGATTGTGGGTGGCAATGGTTTTCTGTGTGCATTAAGGCCACCATCTTCTTCTTCTTCCATCATGGGGTGTTGGAGATTCTCTGCTAATGCTACTAATGTTCCCTTTAAACGTATCTACCGTGGACCTGTTATTGAAGATATTGAAGGTGGGAACTCCCATGTTTGTGGTCTTGTTAGAGGGAACGATGGCCTTGATCTTGGGTGTTGGCAATGGTATGGCTTCAATTCAAGCATAGCCAGGAACATGTCAAGCATTGCAGTGGGAGAGAATTTTGTATGTGGCTTATCAGAAACAGGGAAAGTTACTTGCTTGGGGAGTAACAACAGTAGAGTTGTTGGGCATGAGCCTGGCCATGGTGGAAATTACTCTGTAGTTGCAGCTGGGTTCAGACATGCTTGTGCTATCTCTCTTGATGGTAGCTTGGATTGTTGGGGAGACATGGTGGGTGAGAAACCACAAGGGAGGTTCATTTCTTTGGCGTTGGGAGAGAACAGAAGTTGTGCACTTGGGTATAATGGATTAGTTTCTTGTTGGGGGTCCAATAATTTCAGCATGCCACAGAGATTGCAAGGGACTTTTTTTGAGGCAATTGTAGCAAAGAGGAGTGTTTTTTGTGGAGTTGTGTCTTCTAATTATTCTTTGCTTTGTTGGGGTACTGAAATTGTTGAGTCAAATACCAAGGTGTTTGATAATGTCCTCCCAGGACCTTGTAGGAACCAATGTCCATGCGGACCCTTGTCAGATTCTGCCAAACTCTGTGACTCACCAGCCATCATTTGCAAGCCTTGTCCACCAGCAGTTGAACCACCATCAAGTTCTCCACCTCCATCATCACCACCATCAAATTCTCCACCTCCATCACCCCAACCTGCAGCAGAAAGTGGTTGGAGCAACAGAATGGTGGCATTTCTGGTGGTTGGATGTGTTGGTTGCAGCACCTTGCTGCTAGTCTTGGCTTTCTTCCTTTACAAGTACTGTAAAGGCAGAGTATGCCGTGTCCATGACTCTGGCAGATTGGATGATAACCCTGGGAATGAACAAGAAACTCCAGCTGCTGCCCCTGCTGCAGTTCTGGAGAAGAGATTGAGCCATGTGATTAGCATGGGAAATGGGGGAAGCCATTTAGAGGAATTTTCCATGCAAGTACTGCTTCAAGCCACCAACAATTTCTGTGAGGAGAATAAAATTGGAACTGGGAGCTTTGGTTCAGTGTATCATGCCACACTAGAAGATGGGAAGGAAGTTGCTGTAAAAAGAGCTGAAGTCTCATCCACTTCTCCATCCAATCCAGTTATTATGGGTGGCACCAAAAGGCAAGAAGACAATGACAATGCCTTTATGAATGAGCTTGAAGCTCTATCTAGACTCCACCACAAAAACCTAGTCCGTTTACTAGGTTTCTATGAAGACACAAAAGAACGCATTTTAGTATATGAATATATGAACAATGGTAGCCTAAATGATCATCTCTACAAGCTCCAAAGTTCTTTTCTAAATTCATGGGCAGGTCGCATAAAGGTAGCTCTAGATGCAGCTAGAGGCATAGAGTATTTACACCAATATGCCACTCCACCAATCATTCATCGTGACATTAAATCATCCAACATATTATTGGATGCCAAATGGACAGCCAAAGTGTCTGATTTTGGACTATCATTAATGGGTCCTGAAGATGAGGAGTCACACCTTTCACTTCTAGCAGCTGGCACAGTTGGCTACATGGACCCTGAATACTATAGGCTTCAACATTTGACCACAAAGAGTGATGTGTATAGCTTTGGTGTGGTTTTGCTAGAACTCCTATCTGGGCTCAAAGCAATCCATAAAAACGAAAATGGGGTGCCAAGAAATGTAGTGGATTTTATGGTACCCTTCATTAATCAAGATGAAATTCACAGGGTTTTGGACCCAAAAGTGCCACCTCCAACACCATTTGAGATTGAGGCTGTGGCGTTTGTGGGTTACTTGGCATCAGATTGTGTTCGTCTAGAAGGTAGAGAGAGACCAACTATGACTCATGTTGTAAATAGCTTGGAAACAGCACTGGCTGCTTGTTTAGCCCAACCAATACTCTCAAGGTCCACCACAGATTCTTCAGACTAG 2340 0.4355 MAFLLNPSFCYLFIISLYFLSSLPIINTLSTVSISETSNQTFICALQHPNQQGQSNLNSTSFPPGGIGLQINPNVSYSEIVGGNGFLCALRPPSSSSSIMGCWRFSANATNVPFKRIYRGPVIEDIEGGNSHVCGLVRGNDGLDLGCWQWYGFNSSIARNMSSIAVGENFVCGLSETGKVTCLGSNNSRVVGHEPGHGGNYSVVAAGFRHACAISLDGSLDCWGDMVGEKPQGRFISLALGENRSCALGYNGLVSCWGSNNFSMPQRLQGTFFEAIVAKRSVFCGVVSSNYSLLCWGTEIVESNTKVFDNVLPGPCRNQCPCGPLSDSAKLCDSPAIICKPCPPAVEPPSSSPPPSSPPSNSPPPSPQPAAESGWSNRMVAFLVVGCVGCSTLLLVLAFFLYKYCKGRVCRVHDSGRLDDNPGNEQETPAAAPAAVLEKRLSHVISMGNGGSHLEEFSMQVLLQATNNFCEENKIGTGSFGSVYHATLEDGKEVAVKRAEVSSTSPSNPVIMGGTKRQEDNDNAFMNELEALSRLHHKNLVRLLGFYEDTKERILVYEYMNNGSLNDHLYKLQSSFLNSWAGRIKVALDAARGIEYLHQYATPPIIHRDIKSSNILLDAKWTAKVSDFGLSLMGPEDEESHLSLLAAGTVGYMDPEYYRLQHLTTKSDVYSFGVVLLELLSGLKAIHKNENGVPRNVVDFMVPFINQDEIHRVLDPKVPPPTPFEIEAVAFVGYLASDCVRLEGRERPTMTHVVNSLETALAACLAQPILSRSTTDSSD. 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00071 779 Gene3D Phosphorylase Kinase; domain 1 434 559 - -
Seca6g00071 779 Pfam Regulator of chromosome condensation (RCC1) repeat 204 225 - -
Seca6g00071 779 SUPERFAMILY RCC1/BLIP-II 109 299 IPR009091 -
Seca6g00071 779 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 84 767 IPR044815 GO:0004674
Seca6g00071 779 Gene3D Transferase(Phosphotransferase) domain 1 560 767 - -
Seca6g00071 779 Pfam Protein kinase domain 471 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00071 779 CDD STKc_IRAK 475 758 - -
Seca6g00071 779 SMART serkin_6 469 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00071 779 MobiDBLite consensus disorder prediction 349 370 - -
Seca6g00071 779 ProSitePatterns Protein kinases ATP-binding region signature. 475 497 IPR017441 GO:0005524
Seca6g00071 779 Gene3D - 119 312 IPR009091 -
Seca6g00071 779 SUPERFAMILY Protein kinase-like (PK-like) 449 758 IPR011009 -
Seca6g00071 779 FunFam Serine/threonine-protein kinase-like protein CCR4 560 776 - -
Seca6g00071 779 MobiDBLite consensus disorder prediction 349 371 - -
Seca6g00071 779 ProSiteProfiles Protein kinase domain profile. 469 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00071 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00071 Seca-Chr6 1737986 1740325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00071 28 775 Receptor kinase-like Gene Family AT5G47850 51.039 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Seca6g00071 Pkinase 4.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00071 - - pvu:PHAVU_011G003100g 1102.43