Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00055 ATGCAACCGACATCTGGCGGCGGGCTTCAACGGTTCCACTCAACTCCGGCGAGTTGGTTAGAGTCACTTCTTCTAAAAGACGAAGAGCAACAGCAACAGCCGTTATCCTTCACTCAGCTGCTTTCCACCACTTCCTCTAATCCTAATCCAATCACTCATGACATCGAAATGGAGAAGATTTTAGAGGATTCGGTACCTTGTAGGCTACGTGCAAAGCGTGGTTGTGCTACGCATCCAAGGAGCATTGCTGAAAGGGTTCGGAGGACTCGTATCAGTGACCGCATACGAAAGCTTCAACAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCTGACATGCTAGATGAGGCGGTAGCTTATGTCAAGTTTCTACAAAATCAGATTGAGGTAACCTTTTGTGTGAACTATCAGAGCACCAAAGGAGGTGTAAATGCATGGTTCAAGAGTAAATTGCTGATCGATCCATACAGTGGTTGGCCGTTTGCACATTATTTATGGATTATCAGATTTTCAGTGTTCTGA 525 0.4495 MQPTSGGGLQRFHSTPASWLESLLLKDEEQQQQPLSFTQLLSTTSSNPNPITHDIEMEKILEDSVPCRLRAKRGCATHPRSIAERVRRTRISDRIRKLQQLVPNMDKQTNTADMLDEAVAYVKFLQNQIEVTFCVNYQSTKGGVNAWFKSKLLIDPYSGWPFAHYLWIIRFSVF. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00055 174 SMART finulus 81 131 IPR011598 GO:0046983
Seca6g00055 174 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 135 IPR036638 GO:0046983
Seca6g00055 174 Gene3D - 76 140 IPR036638 GO:0046983
Seca6g00055 174 Pfam Helix-loop-helix DNA-binding domain 80 126 IPR011598 GO:0046983
Seca6g00055 174 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 125 IPR011598 GO:0046983
Seca6g00055 174 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 131 - -
Seca6g00055 174 CDD bHLH_AtbHLH_like 80 131 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00055 Seca-Chr6 1440363 1444666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00055 54 130 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 81.818 5.07e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca6g00055 HLH 8.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00055 - - gmx:100527723 173.711