Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00051 ATGGCACAATTACCTTGTGACAACAATGGGGTGTGTATGGTATGCAAAACTCTCCCAACAGAGGAAGAGAAGCTTGTTTGCTTCACTTGTGTCACCCCTTGGCACGTGGCTTGTCTCTCCTCCCTTCCATCCACCCTTGCCAGCACCATTAACTGGTTGTGTCCAGATTGCTCCAATCCCAATCCTTTTACATCACCCACGGCCTCAGACTTCGCCCCAGCCTTAGCCCCTGAAGTTTGGGATGAATTGAGAAACCTGGTCTTTGCTCTAAAAGCAGTGGAGACGGATGCTTCTCTCTCACGAGAAGAGAAGAACAAAAAACAACAAGACCTAATGTCCGGAAAGGCCGGCAAGGCGGTTGAAGAAAAAGACAAGAATGAAAATGACAAGTCTGTATCTGATTTTCTCATATGCCCCATTTGCATTCAATTGCCAGAGAGGCCTGTCACGACTCCTTGTGGTCACACTTTTTGTCTAAAGTGCTTCGAGAAATTGATTCAACAAGGAAAAAGAACATGTAGCATTTGTCGGCAAGGTATTCCTGCAAAAATGGCCAACCAGCCTCGTATCAATTCTGCATTGGTACATGCCATTCGTATTGCAAAGAAAGACGACAGTAATGGTAGATTTAGTGGGCCTTCTCGTGTTCCTCCGTATACAAATAAGCAAGATAAACCAGATCAACCATATACAACGGATCGTGCACAGAGGAAGGGTCGTGCTAATGTTGCAAGTGGAAAGATTTTTGTCACTGTGCCTACTGATCATTTTGGTCCAATCCCACCAGAGAATGACCATTTGCATAATAAGAGTCTTGTAGTTGGTGAATCTTGGCCAGATAGGTTGGAGTGTAGGCAATGGGGTGCTCACTTCTCACCAATTGGTGGCATTGCAGGACAATCAGATCGTGGTGCACATTCTGTTGTTCTCTCTGGAGGTTATGTTGATGATGAGGATCATGGAGAATGGTTTCTCTACACAGGAAGTGGTGGTAAGGATCTCACTGGAAACAAATGCACAAACAAGGATCACTCTTTTGACCAGAAGTTTGAAAAGTACAACCGTGCACTCCAGATCAGTTCTCAAGAGGGTTATCCGGTTCGAGTTGTGAGACATAGTGATGATCGTGGGGATAGGCCCAAACCCTTGCCAATCATTAATGAGATACAAAAGGCTACCTCCATATTTGAAAGAACCAAATCTCCAGCATGGGATTTTGATGAGGAAGATTCTTGTTGGAAATGGAAGAAACCACCACCACCCAGCAGAAAAAAGGTACAAATTGAGGAACCCACTAAGATAGAAAAGTCAAGTAAAGGAATAAGGAAATTCCAAAAGATGTCAATCAAGGAACAATTGCGAAAAGGGTTCTCATGCCAGATATGCAAGCAGGTTATGGATTCACCAGTAACAACAACATGTGGTCATAATTTCTGCAAGTCTTGTTTGGAAGGTGCATTCGCTGGTCAGACTTTTATGAGAGAGAGAAACATAGGTGGGAGAACGCTTCGGTCCCAGAAAAATGTGATGAAATGTCCTACCTGCACTATTGACATCTCTGATTATCTTCAAAACTTTCAGGTGTGTTAA 1590 0.4377 MAQLPCDNNGVCMVCKTLPTEEEKLVCFTCVTPWHVACLSSLPSTLASTINWLCPDCSNPNPFTSPTASDFAPALAPEVWDELRNLVFALKAVETDASLSREEKNKKQQDLMSGKAGKAVEEKDKNENDKSVSDFLICPICIQLPERPVTTPCGHTFCLKCFEKLIQQGKRTCSICRQGIPAKMANQPRINSALVHAIRIAKKDDSNGRFSGPSRVPPYTNKQDKPDQPYTTDRAQRKGRANVASGKIFVTVPTDHFGPIPPENDHLHNKSLVVGESWPDRLECRQWGAHFSPIGGIAGQSDRGAHSVVLSGGYVDDEDHGEWFLYTGSGGKDLTGNKCTNKDHSFDQKFEKYNRALQISSQEGYPVRVVRHSDDRGDRPKPLPIINEIQKATSIFERTKSPAWDFDEEDSCWKWKKPPPPSRKKVQIEEPTKIEKSSKGIRKFQKMSIKEQLRKGFSCQICKQVMDSPVTTTCGHNFCKSCLEGAFAGQTFMRERNIGGRTLRSQKNVMKCPTCTIDISDYLQNFQVC. 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00051 529 ProSiteProfiles YDG domain profile. 267 419 IPR003105 -
Seca6g00051 529 MobiDBLite consensus disorder prediction 204 239 - -
Seca6g00051 529 SMART PHD_3 11 58 IPR001965 -
Seca6g00051 529 SUPERFAMILY RING/U-box 451 519 - -
Seca6g00051 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 203 IPR013083 -
Seca6g00051 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 528 IPR013083 -
Seca6g00051 529 ProSitePatterns Zinc finger PHD-type signature. 12 57 IPR019786 -
Seca6g00051 529 SUPERFAMILY FYVE/PHD zinc finger 4 65 IPR011011 -
Seca6g00051 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 73 IPR013083 -
Seca6g00051 529 MobiDBLite consensus disorder prediction 99 126 - -
Seca6g00051 529 SMART ring_2 138 176 IPR001841 -
Seca6g00051 529 SMART ring_2 459 515 IPR001841 -
Seca6g00051 529 SMART ring_2 12 57 IPR001841 -
Seca6g00051 529 SMART G9a_1 253 409 IPR003105 -
Seca6g00051 529 SUPERFAMILY RING/U-box 132 200 - -
Seca6g00051 529 Gene3D - 238 392 IPR036987 -
Seca6g00051 529 ProSitePatterns Zinc finger RING-type signature. 474 483 IPR017907 -
Seca6g00051 529 Pfam SAD/SRA domain 271 375 IPR003105 -
Seca6g00051 529 SUPERFAMILY PUA domain-like 241 376 IPR015947 -
Seca6g00051 529 ProSiteProfiles Zinc finger RING-type profile. 459 516 IPR001841 -
Seca6g00051 529 ProSiteProfiles Zinc finger RING-type profile. 138 177 IPR001841 -
Seca6g00051 529 Pfam Zinc finger, C3HC4 type (RING finger) 137 180 - -
Seca6g00051 529 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 374 IPR045134 -
Seca6g00051 529 Pfam RING-type zinc-finger 459 513 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00051 Seca-Chr6 1355463 1358866 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00051 3 528 C2H2 Transcription Factor Family AT5G39550 49.141 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00051 K10638 - gmx:100801535 700.664