Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00050 ATGGCACAATTACCTTGTGACAACAATGGGGTGTGTATGGTATGCAAAACTCTCCCAACAGAGGAAGAGAAGCTTGTTTGCTTCACTTGTGTCACCCCTTGGCACGTGGCTTGTCTCTCCTCCCTTCCACCCACCCTTGCCAGCACCATTAACTGGTTGTGTCCAGATTGCTCCAATCCCAATCCTTTTACATCACCCACGACCTCAGACTCCGCCCCAGCCTTAGCCCCTGGAGTTGGGGATGAATTGAGAAACCTGGTCTTTGCTCTAAAAGCAGTGGAGACAGATGCTTCTCTCTCACGAGAAGAGAAGAACAAAAAACAACAAGACCTAATGTCCGGAAAGGCCGACAAGGCGGTTGAAGAAAAAGACAAGAATGAAAATGACAAGTCTGTATCTGATTTTCTCAGATGCCCCATTTGCATTCAATTGCCAGAGAGGCCTGTCACGACTCCTTGTGGTCACACTTTTTGTCTAAAGTGCTTCGAGAAATTGATTCAACAAGGAAAAAGAACATGTAGCATTTGTCGGCAAGGTATTCCTGCAAAAATGGCCAACCAGCCTCGTATCAATTCTGCATTGGTACATTCCATTCGTATTGCAAAGAAAGACGACAGTAATGGTAGATTCAGTGGGCCTTCTCGTGTTCCTCCTTATACAAATAATCAAGATAAACCAGATCAACCATATACGACGGATCGTGCACAGAGGAAGGGTCGTGCTAATGCTGCGAGTGGAAAGATTTTTGTCACTGTGTCTACTGATCATTTTGGTTCAATCCCACTAGAGATTGACCCTTTGCATAATAAGGGTCTAGTAGTTGGTGAATCTTGGCCAGATAGGTTGGAGTGTAGGCAATGGGGTGCTCACTTCTCACCAATTGGTGGCATTGCAGGACAATCAGATCGTGGTGCACAATCTGTTGTTCTCTCTGGAGGTTATGTTGATGATGAGGATCATGGAGAATGGTTTCTCTACACAGGAAGTGGTGGTAAGGATCTCACTGGAAACAAACGCATAAACAAGGATCACTCTTTTGACCAGAAGTTTGAAAAGTACAACCGTGCACTCCAGATCAGTTCTCAAGAGGGTTATCCGGTTCGAGTTGTGAGGTCTCACAAAGTGAAGCGATCCTCATATGCCCCCGAGAGTGGAGTGCGACATAGTGATGATCGTGGGGATAGGCCCAAACCCTTGCCAATCATTAATGAGCTACAAAAGGCTACCTCCATATTTGAAAGAACCAAATCTCCAGCATGGGATTTTGATGAGGAAGATTCTTGTTGGAAATGGAAGAAACCACCACCACCCAGCAGAAAAAAGGTACAAATTAAGGAACCTACTAAGATAGAAAAGTCAAGTAAAGGAATAAGGAAATTCCAAAAGATGTCAATCAAGGAACAATTGCGAAAAGGGTTCTCATGCCAGATATGCAAGCAGGTTATGGATTCACCAATAACAACAACATGTGGTCAAAATTTCTGCAAGTCTTGTTTGGAAGGTGCATTCGCTGGTCAGACTATTATGAGAGAGAGAAACATAGGTGGGAGAACGCTTCGGTCCCAGAAAAATGTGATGAAATGTCCTACCTGCACTATTGACATCTCTGATTATCTTCTAAACTTTCAGGTTGATATAGCTTTGAAGGGTGTAATTGAGTCACTGAAATCCAAGGTTGAAGAAAACGGAGAAACGTTAGAGGCAAGTGAAGATGTTGATCGGTTACAAGAAAATGGTGCTGAAGAAACTAGTAAGGCGACAGATTCAGTAGTGAAGCACAATGCAAAAAGAAAGAAAACTGATTCTACAAAACAATTACCTAAGATGGGTGATGGTGGTAAAATGAATAAAAGGGGGAAAAGATATAAAAGCTGA 1875 0.4325 MAQLPCDNNGVCMVCKTLPTEEEKLVCFTCVTPWHVACLSSLPPTLASTINWLCPDCSNPNPFTSPTTSDSAPALAPGVGDELRNLVFALKAVETDASLSREEKNKKQQDLMSGKADKAVEEKDKNENDKSVSDFLRCPICIQLPERPVTTPCGHTFCLKCFEKLIQQGKRTCSICRQGIPAKMANQPRINSALVHSIRIAKKDDSNGRFSGPSRVPPYTNNQDKPDQPYTTDRAQRKGRANAASGKIFVTVSTDHFGSIPLEIDPLHNKGLVVGESWPDRLECRQWGAHFSPIGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLTGNKRINKDHSFDQKFEKYNRALQISSQEGYPVRVVRSHKVKRSSYAPESGVRHSDDRGDRPKPLPIINELQKATSIFERTKSPAWDFDEEDSCWKWKKPPPPSRKKVQIKEPTKIEKSSKGIRKFQKMSIKEQLRKGFSCQICKQVMDSPITTTCGQNFCKSCLEGAFAGQTIMRERNIGGRTLRSQKNVMKCPTCTIDISDYLLNFQVDIALKGVIESLKSKVEENGETLEASEDVDRLQENGAEETSKATDSVVKHNAKRKKTDSTKQLPKMGDGGKMNKRGKRYKS. 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00050 624 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 387 IPR045134 -
Seca6g00050 624 SMART G9a_1 253 404 IPR003105 -
Seca6g00050 624 Pfam Zinc finger, C3HC4 type (RING finger) 137 180 - -
Seca6g00050 624 Gene3D - 238 389 IPR036987 -
Seca6g00050 624 Pfam SAD/SRA domain 268 387 IPR003105 -
Seca6g00050 624 MobiDBLite consensus disorder prediction 99 128 - -
Seca6g00050 624 MobiDBLite consensus disorder prediction 204 242 - -
Seca6g00050 624 MobiDBLite consensus disorder prediction 213 229 - -
Seca6g00050 624 ProSiteProfiles YDG domain profile. 267 418 IPR003105 -
Seca6g00050 624 MobiDBLite consensus disorder prediction 562 617 - -
Seca6g00050 624 SUPERFAMILY RING/U-box 467 556 - -
Seca6g00050 624 SMART PHD_3 11 58 IPR001965 -
Seca6g00050 624 Pfam RING-type zinc-finger 475 529 IPR027370 -
Seca6g00050 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 202 IPR013083 -
Seca6g00050 624 ProSiteProfiles Zinc finger RING-type profile. 475 532 IPR001841 -
Seca6g00050 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 454 577 IPR013083 -
Seca6g00050 624 MobiDBLite consensus disorder prediction 562 624 - -
Seca6g00050 624 MobiDBLite consensus disorder prediction 376 398 - -
Seca6g00050 624 CDD RING-HC_ORTHRUS_rpt1 134 181 IPR047498 -
Seca6g00050 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 73 IPR013083 -
Seca6g00050 624 ProSitePatterns Zinc finger PHD-type signature. 12 57 IPR019786 -
Seca6g00050 624 MobiDBLite consensus disorder prediction 376 399 - -
Seca6g00050 624 ProSiteProfiles Zinc finger RING-type profile. 138 177 IPR001841 -
Seca6g00050 624 SMART ring_2 12 57 IPR001841 -
Seca6g00050 624 SMART ring_2 138 176 IPR001841 -
Seca6g00050 624 SMART ring_2 475 531 IPR001841 -
Seca6g00050 624 SUPERFAMILY FYVE/PHD zinc finger 4 64 IPR011011 -
Seca6g00050 624 SUPERFAMILY RING/U-box 132 189 - -
Seca6g00050 624 SUPERFAMILY PUA domain-like 241 387 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00050 Seca-Chr6 1331772 1335537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00050 3 561 C2H2 Transcription Factor Family AT5G39550 50.584 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00050 K10638 - gmx:100801535 792.341