Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00049 ATGACAATGGCACAATTACCTTGTGACAACAATGGGGTGTGTATGGTATGCAAAACTCTCCCAACAGAGGAAGAGAAGCTTGTTTACTTCACTTGTGTCACCCCTTGGCACGTGGCTTGTCTCTCCTCCCTTCCACCCACCCTTTCCAGCACCATTAACTGGTTGTGTCCATATTGCTCCAATCCCAATCCTTTTAAATCACCCACGGCCTCAGACTCCACCCCAGCCTTAGCCCCTCGAGTTGGGGATGAATTGAGAAACCTAGTCTTTGCTCTAAAAGCAGTGGAGACGGATGCTTCTCTCTCACGAGAAGAGAAGAACAAAAAACAACAAGACCTAATGTCCGGAAAGGTCGGCAAGGCGGTTGAAGAAAAAGACAAGAATGAAAATGACAAGTCTGTATCTGATTTTCTCAGATGCCCCATTTGCATTCAATTGACTCCTTGTGGTCACACTTTCTGTCTAAAGTGCTTCGAGAAATTGATTCAACAAGGAAAAAGAACATGTAGCATTTGTCGGCAAGGTATTCCTGCAAAAATGGCATACCAGCCTCGTATCAATTCTGCATTGGTACATGCCATTCGTATTGCAAAGAAAGACGACAGTAATGGTAGATTCAGTGGGCCTTCTCGTGTTCCTCCTTATACAAATAATCAAGATAAACCAGATCAACCATATATGACGGATCGTGCACAGAGGAAGGGTCGTGCTAATGCTGCGAGTGGAAAGATTTTTGTCACTGTGCCTACTGATCATTTTGGTCCAATCCCACCAGAGAATGACCCTTTGCATAATAAGGGTCTAGTAGTTGGTGAATCTTGGCCAGATAGGTTGGAGTGTAGGCAATGGGGTGCTCACTTCTCACCAATTGGTGGCATTACAGGACAATCAGATCGTGGTGCACAATCTGTTGTTCTCTCTGCAGGTTATTTTGATGATGAGGATCATGGAGAATGGTTTCTCTACACAGGAAGTGGTGGTAAGGATCTCACTGGAAACAAACGCACAAACAAGGATCACTCTTTTGACCAAAAGTTTGAAAAGTACAACCGTACACTCCAGATCAGTTCTCGAGAGGGTTATCCGGTTCGAGTTGTGAGATCTCACAAAGTGAAGCGATCCTCATATGCCCCCGAGAGTGGAGTGCGGTATGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATTGCGGGACAACAGGGTTTCAAAGTTTGTCGGTTTCTATTTATAAGATGTGACAATGATCCTGCCCCTTGGACAAGTGATGATCGTGGGGATAGGCCCAAACCCTTGCCAATCATTAATGAGCTACAAAAGGCTACCTCCATATTTGAAAGAACCAAATCTCCAGCATGGGATTTTGATGAACAATTGCGAAAAGGTATGTTAACTTACCCTTACCCCTTTAGTAGCTCCTATTTCGACCTTTCTATTAAATGGTTAATCTTCTTAGTGATATCCATTAAAAATTCTTACTTTTTCCTTATATATGCAGGGTTCTCATGCCAGATATGCAAGCAGGTTATGGATTCACCAGTAACAATAACATGTGGTCATAATTTTTGCATGTCTTGTTTGGAAGGTGCATTCGCTGGTCAAACTTTTATGAGAGAGAGAGAAACATAG 1626 0.4305 MTMAQLPCDNNGVCMVCKTLPTEEEKLVYFTCVTPWHVACLSSLPPTLSSTINWLCPYCSNPNPFKSPTASDSTPALAPRVGDELRNLVFALKAVETDASLSREEKNKKQQDLMSGKVGKAVEEKDKNENDKSVSDFLRCPICIQLTPCGHTFCLKCFEKLIQQGKRTCSICRQGIPAKMAYQPRINSALVHAIRIAKKDDSNGRFSGPSRVPPYTNNQDKPDQPYMTDRAQRKGRANAASGKIFVTVPTDHFGPIPPENDPLHNKGLVVGESWPDRLECRQWGAHFSPIGGITGQSDRGAQSVVLSAGYFDDEDHGEWFLYTGSGGKDLTGNKRTNKDHSFDQKFEKYNRTLQISSREGYPVRVVRSHKVKRSSYAPESGVRYDGIYRIEKCWQIAGQQGFKVCRFLFIRCDNDPAPWTSDDRGDRPKPLPIINELQKATSIFERTKSPAWDFDEQLRKGMLTYPYPFSSSYFDLSIKWLIFLVISIKNSYFFLIYAGFSCQICKQVMDSPVTITCGHNFCMSCLEGAFAGQTFMRERET. 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00049 541 Gene3D - 234 433 IPR036987 -
Seca6g00049 541 ProSiteProfiles YDG domain profile. 263 411 IPR003105 -
Seca6g00049 541 ProSiteProfiles Zinc finger RING-type profile. 502 526 IPR001841 -
Seca6g00049 541 MobiDBLite consensus disorder prediction 209 225 - -
Seca6g00049 541 SUPERFAMILY RING/U-box 498 531 - -
Seca6g00049 541 SMART G9a_1 258 415 IPR003105 -
Seca6g00049 541 Pfam RING-type zinc-finger 140 169 IPR027370 -
Seca6g00049 541 Pfam RING-type zinc-finger 502 526 IPR027370 -
Seca6g00049 541 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 540 IPR045134 -
Seca6g00049 541 SUPERFAMILY FYVE/PHD zinc finger 6 67 IPR011011 -
Seca6g00049 541 ProSitePatterns Zinc finger RING-type signature. 517 526 IPR017907 -
Seca6g00049 541 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 234 429 - -
Seca6g00049 541 Pfam SAD/SRA domain 264 414 IPR003105 -
Seca6g00049 541 SUPERFAMILY RING/U-box 134 191 - -
Seca6g00049 541 SMART ring_2 14 59 IPR001841 -
Seca6g00049 541 SMART ring_2 140 172 IPR001841 -
Seca6g00049 541 SMART ring_2 502 531 IPR001841 -
Seca6g00049 541 ProSiteProfiles Zinc finger RING-type profile. 140 173 IPR001841 -
Seca6g00049 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 539 IPR013083 -
Seca6g00049 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 199 IPR013083 -
Seca6g00049 541 MobiDBLite consensus disorder prediction 200 227 - -
Seca6g00049 541 SUPERFAMILY PUA domain-like 237 432 IPR015947 -
Seca6g00049 541 MobiDBLite consensus disorder prediction 101 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00049 Seca-Chr6 1292621 1299435 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00049 5 539 C2H2 Transcription Factor Family AT5G39550 53.578 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00049 K10638 - gmx:100801535 686.797