LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g00047	TTGGTACATGCCATTCGTATTGCAAAGAAAAACGACAGTAATGGTAGATTCAGTGGGCCTTCTCGTGTTCCTCCTTATACAAATAATCAAGATAAACCAGATCAACCATATACGACGGATCGTGCTCAGAGGAAGGGTCGTGCTAATGCTGCGAGTGGAAAGATTTTTGTCACTGTGCCTACTGATCATTTTGGTCCAATCCCACCAGAGAATGACCCTTTGCATAATAAGGGTCTAGTAGTTGGTGAATCTTGGCCAGATAGGTTGGAGTGTAGGCAATGGGGTGCTCACTTCTCACCAATTGGTGGCATTGCAGGACAATCAGATCGTGGTGCACAATCTGTTGTTCTCTCTGGAGGTTATGTTGATGATGAGGATCATGGAGAATGGTTTCTCTACACAGGAAGTGGTGGTAAAGATCTCACTGGAAACAAACGCACAAACAAGGATCACTCTTTTGACCAGAAGTTTGAAAAGTACAACCGTGCACTCCAGATCAGTTCTCAAGAGGGTTATCCGGTTCGAGTTGTGAGATCTCACAAAGTGAAGCGATCCTCATATGCCCCCGAGAGTGGAGTGCGACATAGTGATGATCGTGGGGATAGGCCCAAACCCTTGCCAATCATTAATGAGCTACAAAAGGCTACCTCCATATTTGAAAGAACCAAATCTCCAGCATGGGATTTTGATGAGGAAGATTCTTGTTGGAAATGGAAGAAACCACCACCACCCAGCAGAAAAAAGGTACAAATTGAGGAACCTACTAAGATAGAAAAGTCAAGTAAAGGAGTAAGGAAATTCCAAAAGATGTCGATCAAGGAACAATTGCGAAAAGGGTTCTCATGCCAGATATGCAAGCAGGTTATGGATTCACCAGTAACAACAACATGTGGTCATAATTTCTGCAAGTCTTGTTTGGAAGGTGCATTCGCTGGTCAGACTTTTATGAGAGAGAGAAACATAGGTGGGAGAACGCTTCGGTCCCAGAAAAATGTGATGAAATGTCCTACCTGCACTATTGACATCTCTGATTATCTTCAAAACTTTCAGGTTGATATAGCTTTGAAGGGTGTAATTGAGTCACTGAAAGCCAAGGTTGAAGAAAATGGAGAAACGTTAGAGGCAAGTGAAGATGTTGATCGGTTACAAGAAAATGGTGCTGAAGAAACTAGTAAGGTGACAAATTCAGTAGTGAAGCACAATGCAAAAAGAAAGAAAACCGATTCTACAAAACAATTACCTAAGATGGGTGATGGTGGTAAAATGAATAAAAAGGGGGAAAAGATATAA	1290	0.4209	LVHAIRIAKKNDSNGRFSGPSRVPPYTNNQDKPDQPYTTDRAQRKGRANAASGKIFVTVPTDHFGPIPPENDPLHNKGLVVGESWPDRLECRQWGAHFSPIGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLTGNKRTNKDHSFDQKFEKYNRALQISSQEGYPVRVVRSHKVKRSSYAPESGVRHSDDRGDRPKPLPIINELQKATSIFERTKSPAWDFDEEDSCWKWKKPPPPSRKKVQIEEPTKIEKSSKGVRKFQKMSIKEQLRKGFSCQICKQVMDSPVTTTCGHNFCKSCLEGAFAGQTFMRERNIGGRTLRSQKNVMKCPTCTIDISDYLQNFQVDIALKGVIESLKAKVEENGETLEASEDVDRLQENGAEETSKVTNSVVKHNAKRKKTDSTKQLPKMGDGGKMNKKGEKI.	430

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g00047	429	MobiDBLite	consensus disorder prediction	14	36	-	-
	Seca6g00047	429	MobiDBLite	consensus disorder prediction	183	205	-	-
	Seca6g00047	429	ProSitePatterns	Zinc finger RING-type signature.	297	306	IPR017907	-
	Seca6g00047	429	Pfam	RING-type zinc-finger	282	336	IPR027370	-
	Seca6g00047	429	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	260	386	IPR013083	-
	Seca6g00047	429	MobiDBLite	consensus disorder prediction	9	52	-	-
	Seca6g00047	429	SUPERFAMILY	PUA domain-like	48	194	IPR015947	-
	Seca6g00047	429	Pfam	SAD/SRA domain	75	194	IPR003105	-
	Seca6g00047	429	SMART	ring_2	282	338	IPR001841	-
	Seca6g00047	429	Gene3D	-	45	196	IPR036987	-
	Seca6g00047	429	ProSiteProfiles	YDG domain profile.	74	225	IPR003105	-
	Seca6g00047	429	MobiDBLite	consensus disorder prediction	183	206	-	-
	Seca6g00047	429	MobiDBLite	consensus disorder prediction	369	429	-	-
	Seca6g00047	429	SUPERFAMILY	RING/U-box	274	363	-	-
	Seca6g00047	429	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED	2	194	IPR045134	-
	Seca6g00047	429	MobiDBLite	consensus disorder prediction	369	387	-	-
	Seca6g00047	429	ProSiteProfiles	Zinc finger RING-type profile.	282	339	IPR001841	-
	Seca6g00047	429	SMART	G9a_1	69	211	IPR003105	-
	Seca6g00047	429	MobiDBLite	consensus disorder prediction	401	429	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g00047	Seca-Chr6	1246912	1249573	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g00047	1	368	C2H2 Transcription Factor Family	AT5G39550	51.605	1.66e-139	410

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g00047	K10638		-	gmx:100801535	581.637