Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00046 ATGGTATGCAAAACTCTCCCAACAAAGGAAGAGAAGCTTGTTTGCTTCACTTGTGTCACCCCTTGGCACGTGGCTTGTCTCTCCTCCCTTCCACCCACCCTTGCCAGCACCATTAACTGGTTGTGTCCAGATTGCTCCAATCCCAATCCTTTTACATCACCCACGGCCTCAGACTCCGCCCTAGCCTTAGCCCCTGGAGTTGGGGATGAATTGAGAAACCTGGTCTTTGCTCTAAAAGCAGTGGAGACGGATGCTTCTCTCTCACGAGAAGAGAAGAACAAAAAACAACAAGACCTAATGTCCGGAAAGGCCGGCAAGGCGGTTGAAGAAAAAGACAAGAATGAAAATGACAAGTCTACTCCTTGTGGTCACACTTTCTGTCTAAAGTGCTTCGAGAAATTGATTCAACAAGGAAAAAGAACATGTAGCATTTGTCGGCAAGGTATTCCTGCAAAAATGGCCGACCAGCCTCGTATCAATTCTGCATTGGTACATGCCATTCGTATTGCAAAGAAAGACGACAGTAATGGTAGATTCAATGGGCCTTCTCGTGTTCCTCCTTATACAAATAATCAAGATAAACCAGATCAACCATATACGACGGATCGTGCACAGAGGAAGGGTCGTGCTAATGCTGCGAGTGGAAAGATTTTTGTCACTGTGCCTACTGATCATTTTGGTCCAATCCCACCAGAGAATGACCCTTTGCATAATAAGGGTCTAGTAGTTGGTGAATCTTGGCCAGATAGGTTGGAGTGTAGGCAATGGGGTGCTCACTTCTCACCAATTGGTGGCATTGCAGGACAATCAGATCGTGGTGCACAATCTGTTGTTCTCTCTGGAGGTTATGTTGATGATGAGGATCATGGAGAATGGTTTCTCTACACAGGAAGTGGTGGTAAAGATCTCACTGGAAACAAACGCACAAACAAGGATCACTCTTTTGACCAGAAGTTTGAAAAGTACAACCGTGCACTCCAGATCAGTTCTCAAGAGGGTTATCCGGTTCGAGTTGTGAGGTGA 1023 0.4594 MVCKTLPTKEEKLVCFTCVTPWHVACLSSLPPTLASTINWLCPDCSNPNPFTSPTASDSALALAPGVGDELRNLVFALKAVETDASLSREEKNKKQQDLMSGKAGKAVEEKDKNENDKSTPCGHTFCLKCFEKLIQQGKRTCSICRQGIPAKMADQPRINSALVHAIRIAKKDDSNGRFNGPSRVPPYTNNQDKPDQPYTTDRAQRKGRANAASGKIFVTVPTDHFGPIPPENDPLHNKGLVVGESWPDRLECRQWGAHFSPIGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLTGNKRTNKDHSFDQKFEKYNRALQISSQEGYPVRVVR. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00046 340 ProSiteProfiles Zinc finger RING-type profile. 121 146 IPR001841 -
Seca6g00046 340 Gene3D - 207 340 IPR036987 -
Seca6g00046 340 MobiDBLite consensus disorder prediction 182 198 - -
Seca6g00046 340 ProSiteProfiles YDG domain profile. 236 340 IPR003105 -
Seca6g00046 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 340 IPR045134 -
Seca6g00046 340 MobiDBLite consensus disorder prediction 87 118 - -
Seca6g00046 340 Pfam SAD/SRA domain 237 340 IPR003105 -
Seca6g00046 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 176 IPR013083 -
Seca6g00046 340 MobiDBLite consensus disorder prediction 173 212 - -
Seca6g00046 340 SUPERFAMILY RING/U-box 117 157 - -
Seca6g00046 340 Pfam Zinc finger, C3HC4 type (RING finger) 116 145 IPR018957 GO:0046872
Seca6g00046 340 SUPERFAMILY FYVE/PHD zinc finger 2 52 IPR011011 -
Seca6g00046 340 SUPERFAMILY PUA domain-like 210 340 IPR015947 -
Seca6g00046 340 SMART G9a_1 231 340 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00046 Seca-Chr6 1222852 1224425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00046 1 340 C2H2 Transcription Factor Family AT5G39550 53.611 4.43e-120 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00046 K10638 - gmx:100801535 454.136