LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g00045	ATGATATGCAAAACTCTCCCAACAAAGGAAGAGAAGCTTGTTTGCTTCACTTGTGTCACCCCTTGGCACGTGGCTTGTCTCTCCTCCCTTCCACCCACCCTTGCCAGCACCATTAACTGGTTGTGTCCAGATTGCTCCAATCCCAATCCTTTTACATCACCCACGGCCTCAGACTCCGCCCTAGCCTTAGCCCCTGGAGAAGCAGTGGAGACGGATGCTTCTCTCTCACGAGAAGAGAAGAACAAAAAACAACAAGACCTAATGTCCGGAAAGGCCGACAAGGCGGTTGAAGAAAAAGACAAGAATGAAAATGACAAGTCTGTATCTGATTTTCTCAGATGCCCCATTTGCATTCAATTGCCAGAGAAGCCTGTCACGACTCCTTGTGGTCACACTTTCTGTCTAAAGTGCTTCGAGAAATTGATTCAACAAGGAAAAAGAACATGTAGCATTTGTCGGCAAGGTATTCCTGCAAAAATGGCCGACCAGCCTCGTATCAATTCTGTATTGGAACATGCCATTCGTATTGCAAAGAAAGACGACAGTAATGGTAGATTCAGTGGGCCTTCTCGTGTTCCTCCTTATACAAATAATCAAGATAAACCAGATCAACCATATACGACGGATCGTGCACAGAGGAAGGGTCGTGCTAGTGCTGCGAGTGGAAAGATTTTTGTCATTGTGCCTACTGATCATTTTGGTCCAATCCCACCAGAGAATGACCCTTTGCATAATAAGGGTCTAGTAGTTGGTGAATCTTGGCCAGATAGGTTGGAGTGTAGGCAATGTGGTGCTCACTTCTCACCAATTGGTGGCATTGCAGGACAATCAGATCGTGGTGCACAATCTGTTGTTCTCTCTGGAGGTTATGTTGATGATGAGGATCATGGAGAATGGTTTCTCTACACAAGAAGTGGTGGTAAGGATCTCACTGGAAATAAACGCACAAACAAGGATCACTCTTTTGACCAGAAGTTTGAAAAGTACAACAGTGCACTCCAGATCAGTTCTCGAGAGGGTTATCCGGTTCGAGTTGTGAGATCTCACAAAGTGAAGCGATCCTCATATGCCCTCGAGAGTGGAGTGTGGTATGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATTGCGGGACAACAGGGTTTCAAAGTTTGTCGGTTTCTATTTATAAGATGTGACAATGAACCTGCCCCTTGGACAAGTGATGATAGTGGGAATAGGCCCAAACCCTTGCCAATCATTAATGAGCTACAAAAGGCTACCTCCATATTTGAAAGAACCAAATCTCCAGCATGGGATTTTGATGAGGAAGATTCTTGTTGGAAATGGAAGAAACCACCACCACCCAGCAGAAAAAAGGTACAAATTGAGGAACATACTAAGATAGAAAAGTCAAGTAAAGGAATAAGGAAATTCTAA	1419	0.4419	MICKTLPTKEEKLVCFTCVTPWHVACLSSLPPTLASTINWLCPDCSNPNPFTSPTASDSALALAPGEAVETDASLSREEKNKKQQDLMSGKADKAVEEKDKNENDKSVSDFLRCPICIQLPEKPVTTPCGHTFCLKCFEKLIQQGKRTCSICRQGIPAKMADQPRINSVLEHAIRIAKKDDSNGRFSGPSRVPPYTNNQDKPDQPYTTDRAQRKGRASAASGKIFVIVPTDHFGPIPPENDPLHNKGLVVGESWPDRLECRQCGAHFSPIGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTRSGGKDLTGNKRTNKDHSFDQKFEKYNSALQISSREGYPVRVVRSHKVKRSSYALESGVWYDGIYRIEKCWQIAGQQGFKVCRFLFIRCDNEPAPWTSDDSGNRPKPLPIINELQKATSIFERTKSPAWDFDEEDSCWKWKKPPPPSRKKVQIEEHTKIEKSSKGIRKF.	473

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g00045	472	FunFam	E3 ubiquitin-protein ligase ORTHRUS 2	214	409	-	-
	Seca6g00045	472	ProSiteProfiles	YDG domain profile.	243	391	IPR003105	-
	Seca6g00045	472	Pfam	Zinc finger, C3HC4 type (RING finger)	113	156	-	-
	Seca6g00045	472	ProSiteProfiles	Zinc finger RING-type profile.	114	153	IPR001841	-
	Seca6g00045	472	Pfam	SAD/SRA domain	244	394	IPR003105	-
	Seca6g00045	472	Gene3D	-	214	413	IPR036987	-
	Seca6g00045	472	SUPERFAMILY	FYVE/PHD zinc finger	2	52	IPR011011	-
	Seca6g00045	472	SMART	ring_2	114	152	IPR001841	-
	Seca6g00045	472	MobiDBLite	consensus disorder prediction	180	218	-	-
	Seca6g00045	472	MobiDBLite	consensus disorder prediction	189	205	-	-
	Seca6g00045	472	MobiDBLite	consensus disorder prediction	72	102	-	-
	Seca6g00045	472	SUPERFAMILY	PUA domain-like	219	411	IPR015947	-
	Seca6g00045	472	MobiDBLite	consensus disorder prediction	68	102	-	-
	Seca6g00045	472	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	67	180	IPR013083	-
	Seca6g00045	472	SMART	G9a_1	238	395	IPR003105	-
	Seca6g00045	472	MobiDBLite	consensus disorder prediction	443	472	-	-
	Seca6g00045	472	SUPERFAMILY	RING/U-box	108	177	-	-
	Seca6g00045	472	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED	1	463	IPR045134	-
	Seca6g00045	472	MobiDBLite	consensus disorder prediction	443	465	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g00045	Seca-Chr6	1200570	1203553	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g00045	1	470	C2H2 Transcription Factor Family	AT5G39550	54.375	2.56e-178	511

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g00045	K10638		-	gmx:100801535	654.825