Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00044 ATGTCAATCAAGGAACGATTGCGAAAAGGGTTCTCATGCCAGATATGCAAGCAGGTTATGGATTCACCAGTAACAACAACATGTGGTCATAATTTCTGTAAGTCTTGTTTGGAAGGTGCATTCGCTGGTCAGACTTTTATGGGAGAGAGAAACATAGGTGGGAGAACGCTTCGGTCCCAGAAAAATGTGATGAAATGTCCTACCTGCACTATTGACATCTCTGATTATCTTCAAAACTTTCAGGTTGATATAGCTTTGAAGGGTGTAATTGAGTCACTAAAAGCCAAGGTTGAAGAAAACGGAGAACCGTTAGAGGCAAGTGAAGATGTAGATCGGTTACAAGAAAATGGTGCTGAAGAAACTAGTAAGGCGACAGATTCAGTAGTGAAGCACAATGCAAAAAGAAAGAAAATTGATTCTACAAAACAATTACCTAAGATGGGTCATGGTGGTAAAATAAATAAAAAGGGGGGAAAAGATATAAAAGCTGAGAAAGCAGAAGATGAAGAAAATGTTTCTTCATTAAGTCCTCTCTATATGTCATCAAATGAGTGA 555 0.3838 MSIKERLRKGFSCQICKQVMDSPVTTTCGHNFCKSCLEGAFAGQTFMGERNIGGRTLRSQKNVMKCPTCTIDISDYLQNFQVDIALKGVIESLKAKVEENGEPLEASEDVDRLQENGAEETSKATDSVVKHNAKRKKIDSTKQLPKMGHGGKINKKGGKDIKAEKAEDEENVSSLSPLYMSSNE. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00044 184 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Seca6g00044 184 MobiDBLite consensus disorder prediction 99 184 - -
Seca6g00044 184 SUPERFAMILY RING/U-box 5 94 - -
Seca6g00044 184 MobiDBLite consensus disorder prediction 153 171 - -
Seca6g00044 184 ProSiteProfiles Zinc finger RING-type profile. 13 70 IPR001841 -
Seca6g00044 184 Pfam RING-type zinc-finger 13 67 IPR027370 -
Seca6g00044 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 111 IPR045134 -
Seca6g00044 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 143 IPR013083 -
Seca6g00044 184 SMART ring_2 13 69 IPR001841 -
Seca6g00044 184 MobiDBLite consensus disorder prediction 99 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00044 Seca-Chr6 1135199 1135991 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00044 2 99 C2H2 Transcription Factor Family AT5G39550 55.102 1.64e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00044 K10638 - gmx:100801535 201.83