Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00043 ATGGCACAATTACCTTGTGACGACAAAGGGGTGTGTATGATTGCTCCAATCCCAATCCTTTTACATCACCCCCAGACCCCAGCCCCAGCCCCTGGAGTTGGAGATGAATTGAGAAACTTGGTCTTTTCTTTAAAAGCAGTGGAGATAGATTCTTATCTCTCACGAGAAGAGAAGAACAAAAAACAACAAGACCTAATGCCCGGAAAGGCCGGCAAGGCGGTTGAAGAAAAAGACAAGAATGAAAATGACAAGTCTGTATCTGATTTTCTCACCAAGGCTCTCAGATGCCCCATTTGCATTCAATTGCCAGAGAGGCCTGTCATGACTCCTTGTGGTCACACTTTCTGTCTAAAGTGCTTCGAGAAATGGATTCAACAAGGGAAAAGAACTTGTAGCATTTGTCGGCAAGATATTCCTGCAAAAATGGCTAACCAACCTCGTAACAATTCTGCATTGGTACATGCCATTCGTATTGCAAAGAAAGACAACAATAATGATAGAGTCGGCGGGTCTTCTCGTGTTCCTCCTTATACGAATAATCAAGATAAACCAGATCAACCATATACGACGGATCGTGCACAGAGGAAGGGTCGTGCTAATGCTGCGAGTGGAAAGATTTTTGTCACTGTGCCTACTGATCATTTTGGTCCAATCCCACCCGAGAATGACCCTTTGCATAATAAGGGTCTGGTAGTTGGTGAATCTTGGCCAGATAGGCTGGAGTGCAGGCAATGGGGTGCTCACTTCTTACCAATCGGTGGCATTGCCGAACAATCAGATCGTGGTGCACAATTTGTTGTTCTCTCTGGAGGTTATGTTGATGATGAGGATCATGGAGAATGGTTTCTCTACACAGGAAGTGGTGGTAAGGATCTCACTGGAAACAAACGCACAAACAAGGATCACTCTTTTGACCAGAAGTTTGAAAAGTACAACCGTGCACTCCAGATCAGTTGTCAAGAGGGTTATTCGGTTCGAGTTGTGAGACATAGCGATGATCGTGGGGATAGGCCCAAACCCTTGCCAATCATTAATGAGCTACAAAAGGCTACCTTCATATTTGAAAGAACCAAATCTCCAGCATGGGATTTTGATGAGGAAGATTCTTGTTGGAAATGGAAGAAACCACCACCACCCAGCAGAAAAAAGGTACAAATTGAGGAACCTACTAAGATAGAAAAGTCAAGTAAAGGAATAAGGAAATTCCAAAAGATGTCAATCAAGGAACGATTGCGAAAAGGGTTCTCATGCCAAATATACAAGCAGGTTATGGATTCACCAGTAACAACACAATGTGGTCATAATTTCTGCAAGTCTTGTTTGGAAGGTGCATTCGCTGGTTTGAAGGGTGTAATTGAGTCACTAAAAGCCAAGGTTGAAGAAAATGGAGAAACGTTAGAGGCAAGTGAAGATGTAGATCGGTTACAAGAAAATGGTGCTGAAGAAACCAGGGGAAAAGGTATAAAAGCTGAGAAAGCAGAAGATGAAGAAAATGTTTCTCCATTAAGTCCTCTCAATATGTCATCAAATGAGTGA 1536 0.429 MAQLPCDDKGVCMIAPIPILLHHPQTPAPAPGVGDELRNLVFSLKAVEIDSYLSREEKNKKQQDLMPGKAGKAVEEKDKNENDKSVSDFLTKALRCPICIQLPERPVMTPCGHTFCLKCFEKWIQQGKRTCSICRQDIPAKMANQPRNNSALVHAIRIAKKDNNNDRVGGSSRVPPYTNNQDKPDQPYTTDRAQRKGRANAASGKIFVTVPTDHFGPIPPENDPLHNKGLVVGESWPDRLECRQWGAHFLPIGGIAEQSDRGAQFVVLSGGYVDDEDHGEWFLYTGSGGKDLTGNKRTNKDHSFDQKFEKYNRALQISCQEGYSVRVVRHSDDRGDRPKPLPIINELQKATFIFERTKSPAWDFDEEDSCWKWKKPPPPSRKKVQIEEPTKIEKSSKGIRKFQKMSIKERLRKGFSCQIYKQVMDSPVTTQCGHNFCKSCLEGAFAGLKGVIESLKAKVEENGETLEASEDVDRLQENGAEETRGKGIKAEKAEDEENVSPLSPLNMSSNE. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00043 511 CDD RING-HC_ORTHRUS_rpt1 94 139 IPR047498 -
Seca6g00043 511 MobiDBLite consensus disorder prediction 159 203 - -
Seca6g00043 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 486 IPR013083 -
Seca6g00043 511 ProSiteProfiles Zinc finger RING-type profile. 96 135 IPR001841 -
Seca6g00043 511 Pfam SAD/SRA domain 226 333 IPR003105 -
Seca6g00043 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 163 IPR013083 -
Seca6g00043 511 Pfam Zinc finger, C3HC4 type (RING finger) 94 139 - -
Seca6g00043 511 SMART ring_2 417 503 IPR001841 -
Seca6g00043 511 SMART ring_2 96 134 IPR001841 -
Seca6g00043 511 Pfam RING-type zinc-finger 417 441 IPR027370 -
Seca6g00043 511 SMART G9a_1 220 360 IPR003105 -
Seca6g00043 511 MobiDBLite consensus disorder prediction 168 187 - -
Seca6g00043 511 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 46 332 IPR045134 -
Seca6g00043 511 Gene3D - 196 344 IPR036987 -
Seca6g00043 511 MobiDBLite consensus disorder prediction 462 511 - -
Seca6g00043 511 ProSiteProfiles YDG domain profile. 225 377 IPR003105 -
Seca6g00043 511 SUPERFAMILY RING/U-box 409 444 - -
Seca6g00043 511 SMART Ubox_2 93 159 IPR003613 GO:0004842|GO:0016567
Seca6g00043 511 ProSitePatterns Zinc finger RING-type signature. 432 441 IPR017907 -
Seca6g00043 511 MobiDBLite consensus disorder prediction 462 498 - -
Seca6g00043 511 MobiDBLite consensus disorder prediction 57 84 - -
Seca6g00043 511 SUPERFAMILY PUA domain-like 199 334 IPR015947 -
Seca6g00043 511 SUPERFAMILY RING/U-box 89 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00043 Seca-Chr6 1124024 1127823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00043 3 453 C2H2 Transcription Factor Family AT5G39550 44.404 5.84e-145 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00043 K10638 - gmx:100801535 598.586