Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00035 ATGGCTTTTTGGGGTGTTGAGGTAAAATCGGCAAAGCCTTTTACTCATGAATACGATTCTTCCAAAGGACGCCTCCACATTTCTATGGCCACTTTGGGCTTCGGCACTTCAACCGCCAAAAGCACACTTCAATGTAATGTGGGAAACAGGAGTCCTGTATATCTGTGTTCTCTCTATCCTGGAAACACCGAATCATTGCAATTAAATTTGGAGCTCGAGGAAGATGATAAAGTCATTTTCTCCGTTCTTGGCCCTAGGAGCATTCATCTCTGCGGCTATTATCTTGCCTCCACTTTTCGGAAAACCATCGCTGCTGATGGGGAATCATACGGGGAAGATATTGCAGATACAGAGACAGAGAAATCTGATTACAGTGATGAAGATGATTATGATGATAGTTTTATTGATGATGATGATGATCCAGAGGTTTTCCCACCAACGCCTATTTCCAATGAAGAGGAAGCTTCCCGTGATAGCAGACCAAAAGGTAAGAAAGGTAACCGTGGAAGGCTGAGGAAGAAGTACCAGTCATTATACTCAGATGATGACGGCTCTTTAGAACAAAAGATAATTGTCAATGACAGTGTGGATGACCAATCCAAGGAAATTGATAATGAAGATGGCCTACCAATTTCATCTCTTTACAAGAATAAAACCTCTCAAAGGGCCTTGTTTGAGGAAAGTGATGATAACATTGACAGAGGAGCAGATGATGCTGGCAACATGAATGGTGAAGATGATAGAAATAGTAATACTGAAACAAATTTAAAAACTGATGATGTTTTTGTAGATTGCCAGATGCAGAGGGAAGCTGAACTGTCTGACCACTTGGTAGATCCTTCCACCCTCATGGATGTTGAGAATGTTAAAAAATTAAAAAAGAAAAAGAAGGGAAAGGGAAAAGAAACAAAGAGTCCGTCTAATGACCAGTCTATCAAACTAAATAATGCTGTGCAAGATGAGCCAAAAATGGACAAGATGACCCAGGGTTTTCTGGAAGTAAATGAACACCAGCAACAGCATGCTGATGATAATGAAATCACGGATAAAATCCTACCTTTCTCTGAGGTTGGTCAAGGACAGGGCAAAAAAACAAAGAAAAGGAAAGAACTATCAAAGGAGGGGACAATTTCTAATGATGCTTATCATAGCAATCCATCTAATCTGCCCCAGAGAGATGAACACAATAAACAGGACACAGTTGTAAATAAGGCGGAAGGTGCAGAGCCTTCACAAGTTATAAAATTGTCAAATGGGCTAATTATTGAACAGCTCGAGTCGGGGACAAAAGATGGCAAAATTGCTGCATTAGGGAAAAAGATCAGCATCCAGTACACTGGCAAGTTGAAGGAAAATGGAGTAGTATTTGAGTCAAATGCTGGACAAGCTCCTTTCAAATTTCGCCTTGGTAAAGGAGAAGTTATTGAGGGTTGGGATGTTGGCCTTGAAGGCATGCAAGTTGGAGAAAAGAGAAGACTTGTAATTCCTCCATCAATGGCGTCGAAGGGTGATGGACACAGTGATAGTGCCAAAATACCACCAGATTCATGGTTGGTTTATGATTTTGAACTGGTTAAAGTTCATTGA 1587 0.4077 MAFWGVEVKSAKPFTHEYDSSKGRLHISMATLGFGTSTAKSTLQCNVGNRSPVYLCSLYPGNTESLQLNLELEEDDKVIFSVLGPRSIHLCGYYLASTFRKTIAADGESYGEDIADTETEKSDYSDEDDYDDSFIDDDDDPEVFPPTPISNEEEASRDSRPKGKKGNRGRLRKKYQSLYSDDDGSLEQKIIVNDSVDDQSKEIDNEDGLPISSLYKNKTSQRALFEESDDNIDRGADDAGNMNGEDDRNSNTETNLKTDDVFVDCQMQREAELSDHLVDPSTLMDVENVKKLKKKKKGKGKETKSPSNDQSIKLNNAVQDEPKMDKMTQGFLEVNEHQQQHADDNEITDKILPFSEVGQGQGKKTKKRKELSKEGTISNDAYHSNPSNLPQRDEHNKQDTVVNKAEGAEPSQVIKLSNGLIIEQLESGTKDGKIAALGKKISIQYTGKLKENGVVFESNAGQAPFKFRLGKGEVIEGWDVGLEGMQVGEKRRLVIPPSMASKGDGHSDSAKIPPDSWLVYDFELVKVH. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00035 528 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Seca6g00035 528 MobiDBLite consensus disorder prediction 336 395 - -
Seca6g00035 528 SUPERFAMILY FKBP-like 406 527 - -
Seca6g00035 528 MobiDBLite consensus disorder prediction 361 376 - -
Seca6g00035 528 Gene3D Nucleoplasmin core domain 1 98 - -
Seca6g00035 528 MobiDBLite consensus disorder prediction 119 143 - -
Seca6g00035 528 Gene3D - 386 528 IPR046357 GO:0003755
Seca6g00035 528 MobiDBLite consensus disorder prediction 272 322 - -
Seca6g00035 528 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 435 525 IPR001179 GO:0003755
Seca6g00035 528 MobiDBLite consensus disorder prediction 222 254 - -
Seca6g00035 528 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 527 - -
Seca6g00035 528 MobiDBLite consensus disorder prediction 111 179 - -
Seca6g00035 528 MobiDBLite consensus disorder prediction 196 259 - -
Seca6g00035 528 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 438 528 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00035 Seca-Chr6 971328 978183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00035 438 525 Calmodulin-binding Proteins AT5G48570 40.449 1.02e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00035 K14826 - gmx:100798135 565.459