Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00029 ATGTACAAACTTTCATTACTTCTTGATGTTGTTTTAAATCCTAGAGGCTTCGGAAGGAAAGAGGGTAATCTTTTAAGAAGGTGCACTGTCTGCAGGGGCTGGGTGACTTGGGACATACTGAATGCACTTCGAGATACTGGGGATCTAGTCAGAGCAACAGAATTTATTGGTCAAAGTTCAGGTAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGTTCCGGTGCCTACAATGTCATCGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACAGGGAGAAAGCACGATGGACGAGTTGATATCCTTTGGTTGTTAGTTTTATTTGTTTCTTGGCAATTGCTACTGCTGACAAAAAAAGAGCTTTCCTGA 468 0.406 MYKLSLLLDVVLNPRGFGRKEGNLLRRCTVCRGWVTWDILNALRDTGDLVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVDILWLLVLFVSWQLLLLTKKELS. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00029 155 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 155 IPR001650 -
Seca6g00029 155 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 38 135 - -
Seca6g00029 155 Pfam Helicase conserved C-terminal domain 65 127 IPR001650 -
Seca6g00029 155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 135 IPR027417 -
Seca6g00029 155 SMART helicmild6 50 128 IPR001650 -
Seca6g00029 155 Gene3D - 34 139 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00029 Seca-Chr6 907446 909026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00029 69 126 Eukaryotic Initiation Factors Gene Family AT3G13920 36.207 9.86e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00029 K10896 - gmx:100820078 176.792