Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00024 ATGGGTGTTTCCAATAAAACTCCAGAGTTTCTCAAGATGAACCCCATTGGAAAGGTTCCTGTACTAGAAACGCCTTATGGTCCTGTTTTTGAAAGCAATGCCATTGCACGATATGTTACTCGCTTAAAGGCTGATAATCCTCTTTATGGATCCTCACTAATTGAATATGCCCGTATTGAGCAATGGATTGATTTCGCTACAATGGAGATAGATGCTAATATTTTGCGATGGTACATACCTCGTGCTGGTTTTGCTGTGTACCTTCCTCCGGCGGAGGAAGCAGCAATTTCTGCATTGAAGAGGGCACTGGATGCTTTGAACACACATCTTGCTTCCAACACATACCTTGTTGGACACTCTGTTACATTGGCTGATATCATTATGACATGTAACTTACTTTTGGGATTTAACCGATTAATGACCAAGGGTTTTACTTCTGAGTTCCCTCATGTTGAGAGGTACTTCTGGACCATGGTTAATCAACCAAATTTCCGGAAGATACTTGGTGAGATGAAGCAAACAGATTCTGTCCCACCTATTCAGTCTATCAAAAAACCTTCACAGCCAAAAGAGCCTGTGAAACCAAAGGCAAAGGATGAAGCAAAGAAAGAGGCTAAAAAAGAAGTAAAAAAGGAAGCAGAACCCAAAGAAGAGACTGGTGAGGAAGATGTGGCACCAAAGTCCAAGCCAAAGAATCCCCTTGATCTGTTGCCTCCTAGCAAAATGATTCTGGATGAATGGAAAAGGTTATACTCGAACACAAAAACAAACTTCCGTGAAGTCGCAATTAAAGGGTTTTGGGACATGTACGATCCCGAGGGATACTCTCTTTGGTTCTGTGATTACAGATACAATGATGAGAACACAGTGTCATTTGTGACTTTGAATAAGGTGAGTGGTTTTCTGCAACGAATGGATTTGGCTCGGAAGTATGCTTTTGGGAAGATGCTAATAATTGGCTCAGAGCCACCATTCAAAGTGAAGGGCTTGTGGCTTTTCCGTGGAACAGAGATTCCACAATTTGTGATTGATGAGTGCTATGACATGGAGTTATATGAGTGGACAAAAGTTGATATCACAGATGATGCTCAAAAAGAGCGTGTCAATCAGATGATTGAAGACCATGAGCCTTTTGAAAGTGAAGCTTTACTGGATGCCAAGTGCTTCAAGTGA 1173 0.416 MGVSNKTPEFLKMNPIGKVPVLETPYGPVFESNAIARYVTRLKADNPLYGSSLIEYARIEQWIDFATMEIDANILRWYIPRAGFAVYLPPAEEAAISALKRALDALNTHLASNTYLVGHSVTLADIIMTCNLLLGFNRLMTKGFTSEFPHVERYFWTMVNQPNFRKILGEMKQTDSVPPIQSIKKPSQPKEPVKPKAKDEAKKEAKKEVKKEAEPKEETGEEDVAPKSKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYRYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGTEIPQFVIDECYDMELYEWTKVDITDDAQKERVNQMIEDHEPFESEALLDAKCFK. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00024 390 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 230 390 IPR001662 GO:0003746|GO:0006414
Seca6g00024 390 SFLD Main (cytGST) 5 158 - -
Seca6g00024 390 SUPERFAMILY Thioredoxin-like 5 50 IPR036249 -
Seca6g00024 390 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 230 390 IPR036433 GO:0003746|GO:0006414
Seca6g00024 390 MobiDBLite consensus disorder prediction 189 229 - -
Seca6g00024 390 MobiDBLite consensus disorder prediction 175 236 - -
Seca6g00024 390 Gene3D Glutaredoxin 1 39 - -
Seca6g00024 390 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 52 180 IPR010987 -
Seca6g00024 390 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 47 IPR004045 -
Seca6g00024 390 Pfam Glutathione S-transferase, C-terminal domain 93 162 IPR004046 -
Seca6g00024 390 Pfam Glutathione S-transferase, N-terminal domain 5 40 IPR004045 -
Seca6g00024 390 FunFam Elongation factor 1-gamma 1 230 390 - -
Seca6g00024 390 CDD GST_C_EF1Bgamma_like 55 175 - -
Seca6g00024 390 FunFam Elongation factor 1 gamma 45 181 - -
Seca6g00024 390 SUPERFAMILY eEF1-gamma domain 230 390 IPR036433 GO:0003746|GO:0006414
Seca6g00024 390 Gene3D - 45 182 - -
Seca6g00024 390 Pfam Elongation factor 1 gamma, conserved domain 229 337 IPR001662 GO:0003746|GO:0006414
Seca6g00024 390 SUPERFAMILY GST C-terminal domain-like 45 178 IPR036282 -
Seca6g00024 390 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 390 IPR044628 GO:0004364
Seca6g00024 390 SMART EF1G_2 229 337 IPR001662 GO:0003746|GO:0006414
Seca6g00024 390 SFLD Glutathione Transferase (cytosolic) 5 158 IPR040079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00024 Seca-Chr6 797947 801402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00024 1 390 Eukaryotic Initiation Factors Gene Family AT1G57720 74.872 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00024 K03233 - jre:109013138 670.233