Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00020 ATGGATGACTCAAATGGCCAAGATAATGTTGAAGATGTCTTAGAAGAAGTTATGGTTGAAGGTGTGCGAATAGACGGTGAGGATGACTTTGTGGACATTGATTTTTCGACGATCACTGAAGATGATGTGTTGAACTTCCACTTCCCTGACATGGATGTTGCATTTGCGTTTTATAATAAGTTTGCAATGTTGAAGGGTTTCTATGCAAGAAAAGCCAAGGAGAGAAAAAATAAGAACAATGAAATTGTGGAGAAGTCCTTTTTTTGTCACAAAGAAGGCAAGAGACGAAGAAGGAAGGGCGTGAAAGGAGTGCGGGCACAAAAGCCAGAGACAAGATGTTTTTGTAAGGCTAGTATGAAGATTCGTGTTAATAAACAAACTGGTCGCTGGCATGTGACTTATTTCTCAGATGATCATACCCATAAGTTGTTGGACCCTAAGTATAGTAGGATGTTGCCAACCCATAGGAGAATGAATGATGCGGACATAATGCAGATGAACAACATGCGAAAGGCTGGAATTAGCGCTCCCCAAATATATAGCTCATTTGCTTGTCAGGCAGGTGGTTTTGAACATGTTGGTTTCAGCAAGAGGGACATGTATAACCAAATAGTGAAGCAAAGGCAATTTCATCCTTCTGATGCTAAGACTGCTATTAAATTCCTACGTGGGTTGAAAGCTGCTGATGAAGAAATGTTTTGGAGTCACACGGTTGATTACAAATTATTCGGTGATGTTCTTGCGTTTGACGCAACGTACCAAAAGAATAAATATCACTACCCGCTAGTTATATTTTCTGGTGTCAACCATCACAACCAGTCAATAGTGTTTGCTAGTGCTTTGATTGCTGATGAAACCGAAGAAACCTATGTGTGGTTGCTACAACAGTTGTTGGGTGTTATGAAAGGCAAGAGTCCCGCGGCAGTAATTACCGATGGAGATGTTGCTATGGGGAATTCCATAAGAAGAGTTTTTCCAAATATGACTCATAGATTATGTGCATGGCACCTCTTACGCAATGCTGCCAGCAATGTCAAAAATCTAAAAATGGTATTAGAATTTAGAAAATGCATGTTGGGTGATTATGAGCTTCACCAGTTTCATCGAAGGTGGGATAAGATGGTCAAAGCTTTTAGTCTTGAGGACAATACCTGGGTGAAAGATACTTATGAAAAACGGAAGATGTGGGCAACGACATACTTAAGGGGTAACTTCTTTGCTGGATTCAGGACCACCTCTCGGTGTGAGGGGTTACATTCGCACCTGGGGAAGTTTGTTCATTCTCGAAATGATTTGGCTGACTTTTTGGAGAACTTTCGCCGCTGTTTGGAATCTTTTCATTACAGGGAATTAGAGGCTGACTTCACCTCTGTTCATGGTGAACCAGTTATGCAAACAAATATTCAATCATTAGAGAGGTCTGCCTGTAAAGTGTTCATAAGGGAGGTGTTCATGTTAGTCCAACCTGCACTTGGGAGGGGAAGCACTATCCGAGTGAAGTCTTGCACACAGATGATGACACAGACCATTTACAGTGTCTAA 1542 0.4125 MDDSNGQDNVEDVLEEVMVEGVRIDGEDDFVDIDFSTITEDDVLNFHFPDMDVAFAFYNKFAMLKGFYARKAKERKNKNNEIVEKSFFCHKEGKRRRRKGVKGVRAQKPETRCFCKASMKIRVNKQTGRWHVTYFSDDHTHKLLDPKYSRMLPTHRRMNDADIMQMNNMRKAGISAPQIYSSFACQAGGFEHVGFSKRDMYNQIVKQRQFHPSDAKTAIKFLRGLKAADEEMFWSHTVDYKLFGDVLAFDATYQKNKYHYPLVIFSGVNHHNQSIVFASALIADETEETYVWLLQQLLGVMKGKSPAAVITDGDVAMGNSIRRVFPNMTHRLCAWHLLRNAASNVKNLKMVLEFRKCMLGDYELHQFHRRWDKMVKAFSLEDNTWVKDTYEKRKMWATTYLRGNFFAGFRTTSRCEGLHSHLGKFVHSRNDLADFLENFRRCLESFHYRELEADFTSVHGEPVMQTNIQSLERSACKVFIREVFMLVQPALGRGSTIRVKSCTQMMTQTIYSV. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00020 513 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 43 500 IPR031052 GO:0006355
Seca6g00020 513 Pfam FAR1 DNA-binding domain 57 144 IPR004330 -
Seca6g00020 513 Pfam MULE transposase domain 246 340 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00020 Seca-Chr6 726149 727798 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g00020 MULE 5.8e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00020 - - ahf:112758016 525.398