Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00008 ATGGCAGAGGATAATGTTCATGATAATGTTTTTGTCAATATGGAGGAGGTCAGGGTTGATAGTATGGAAGGAACTTTTGATAGTGGTGAAGGTTCACATGACTACCGTGAAGAGGATGATTATTACCTGTTTGGTCTCCAAGGCATATCAATTGATGGGGAGGATGACTTCAATGACTTTCATGCTGACATGATGACTGATGAACATGTGATGAAATTTAATTTCTCCAACATTGAAGCTGCTTTTGAATTTTACCAATGGTTTGGGAAAATGAGAGGTTTTTCTGCCAGGAGAGGCAAGGAGCGCAAAGACAAGAATGGAGACATAGTGGAGAAGACATTTTTTTGCCACAGAGAAGGAAATCGACAGAGAAGGAAAGGTGTAAAGGGAGTGCGAAAGTCAAAGCCGGAGACAAGGAGTGGTTGTCTTGCTCATTTAAAGATACGAGTGGACAAACAGATGGGTCGTTGGCATGTGACTTATTTCTCAAATGTGCATAACCATAATATGCTAAAGCCTAAGTACACAAGGATGCTACCTGCTCATAGAAGGATGAAAGAAGCTGACATTTTGCAAATGAACAACATGCGTAAGGCTGGAATTAGCACCCCCCAAATATATGGTTCATTCGCTAGTCAATGTGGTGGTTTTGAACATGTTGGTTTCAGTAAACGAGACATGTATAATGAAATTGTGAAGCAAAGGAAGTTTCTAGGATCTGATGTGAAGAGTGCCTTGCAATTCCTTCGAAAAATGAAAGAAACTGATGAAGCACTCTATTGGAAGCATACGGTGGATGGTGAAGGTAGACTCTATCGCTTATTTTGGTGTGATGGGCATAGTCAAGTTGACTACAAATTATTTGGTGATGTATTGGCATTTGATGCTACTTATCAGAGGAACAAATACCACTATCCATTAGTGGTATTTTCGGGTGTCAATCACCATAACCATTCTATAATTTTTGTTACCGCTCTAGTTGGTGATGAAACTGAAGAAACATATGTATGGTTGCTTCAACAGTTTTTGGTTGCTATGAAAGGCAAGAGCCCTACAGCTGTCATTACTGATGGAGATGTTGCTATGAGGAATGCTATACGGAGAGTCTTTCCGAATACCAATCATAGATTGTGTGCATGGCACCTTCTACGTAATGCCGCTAGTAATGTTAAAAACCCAAAGATGGTGGCTGAATTCAAGAGATGTATGTTGGGAGATTATGAGTTGCATCAGTTTCATCGTAAGTGGGAAAAGATGGTTATAGAGTTTGGACTTGATGATAATGCTTGGGTGAAAGATACATTTGAGAAAAGGCGGATGTGGGCAACAGCGTATATTAGGGGTAAATTTTTTGCTGGGTTTAGGACCACCTCTCGATGTGAGGGCCTGCATTCTCATGTTGGCAAGTTTGTGCACTCTAGACATGATTTAGCAGATTTTCTTGAGAATTTTCGCCGCTGTCTAGACAGTTTTCGGTATAGGGAATTAGAGGCTGACTTTGCCTCTGTTCATGGTGAGCCAATTATGCAAACTAATATTAAATCATTGGAGAAATCTGCTTGTAGGAACTTTACTAGAGAGGTGTTCACATTATTTCTACCTGGTCTTGTTAGAGGGAGCACAGTGAGAGTGAAGAGTACCACACAATTGATGTCACAGACGATTTTCACTGTGTCAAAGTATGGGCGACCAGGCAAGGAATGGCATGTGTCTGGGATGCCTCATCCATTTCAAATTAAATGTTCATGTAGGAGGATGGAGTCATTTGGTCTTCCGTGTGAGCACATTGTTGGTGTGCTTGTCCATCTAAACACCGAGGAGATGCCAAAGTCTTTGGTGTTAGATAGGTGGACAATGGCTATTAAAGAAAAGATCCATGGACACAATGGTGAACAAAGCATTGTGTGGGACTCTGTATACATGGCAAGGTGTGGGGCAATGGATTGGATGTGTAGACTTATGACTAGAGCATGTGCGAGGTCAACTATGTAA 1992 0.4111 MAEDNVHDNVFVNMEEVRVDSMEGTFDSGEGSHDYREEDDYYLFGLQGISIDGEDDFNDFHADMMTDEHVMKFNFSNIEAAFEFYQWFGKMRGFSARRGKERKDKNGDIVEKTFFCHREGNRQRRKGVKGVRKSKPETRSGCLAHLKIRVDKQMGRWHVTYFSNVHNHNMLKPKYTRMLPAHRRMKEADILQMNNMRKAGISTPQIYGSFASQCGGFEHVGFSKRDMYNEIVKQRKFLGSDVKSALQFLRKMKETDEALYWKHTVDGEGRLYRLFWCDGHSQVDYKLFGDVLAFDATYQRNKYHYPLVVFSGVNHHNHSIIFVTALVGDETEETYVWLLQQFLVAMKGKSPTAVITDGDVAMRNAIRRVFPNTNHRLCAWHLLRNAASNVKNPKMVAEFKRCMLGDYELHQFHRKWEKMVIEFGLDDNAWVKDTFEKRRMWATAYIRGKFFAGFRTTSRCEGLHSHVGKFVHSRHDLADFLENFRRCLDSFRYRELEADFASVHGEPIMQTNIKSLEKSACRNFTREVFTLFLPGLVRGSTVRVKSTTQLMSQTIFTVSKYGRPGKEWHVSGMPHPFQIKCSCRRMESFGLPCEHIVGVLVHLNTEEMPKSLVLDRWTMAIKEKIHGHNGEQSIVWDSVYMARCGAMDWMCRLMTRACARSTM. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00008 663 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 68 643 IPR031052 GO:0006355
Seca6g00008 663 Pfam MULE transposase domain 291 385 IPR018289 -
Seca6g00008 663 SMART 26again6 579 606 IPR006564 GO:0008270
Seca6g00008 663 Pfam FAR1 DNA-binding domain 83 171 IPR004330 -
Seca6g00008 663 Pfam SWIM zinc finger 575 604 IPR007527 GO:0008270
Seca6g00008 663 ProSiteProfiles Zinc finger SWIM-type profile. 556 604 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00008 Seca-Chr6 400680 404905 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g00008 MULE 1.9e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00008 - - tpra:123913749 676.781