Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05524 ATGACAATTGCAGCAGCAACCTCATCAGTCACCATGAGCCTGAGCATGAGCCAAAACCACAGCCATGACGACACCATCAACGATGACAACAACAAGCCAGATGATCATGCGCACGACATGGTGATGCCTGGATTTCGTTTCCACCCAACTGAAGAAGAGCTCGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCGTTTCAATGTTGAGCTTATTACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCCTTAGCAGCAATTGGTGAGAAGGAGTGGTACTTTTATGTGCCTAGAGATAGAAAGTACCGCAACGGTGATCGTCCCAATCGTGTTACAACCTCTGGGTATTGGAAAGCAACAGGAGCCGATAGGATGATTCGAACCGAGAACTTCAGGTCTATCGGGCTGAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCAAAAGGCCTCCGAACCAGTTGGATCATGAATGAGTATCGTTTGCCTCAACATGAAACTGAAAGATATCAGAAGGCTGAGATATCACTTTGCCGTGTTTATAAGAGAGCTGGTGTGGAAGACCATCCCTCCCTCCCTCGTTGTCTCCCAACCCGGCCATCCTCATCACATTCAGACATTAAGAATTATAAGCCAAATGAAACGGTTCACCTGAACATGGGATTTGTGGGCCATCCACAGAAAATTGATCATCAAAAACTGATGAATGAAAGCAGCAGCAGTACTAGTACAGCAGCTGGGTCAGATGTCACTCTTGGGGGGCTAATTCCAAAGCACAATGCTTACCGTACACTTGGACTACCTGCAGTTCCAGTGGAGGAGATACTCATGCAGCAATCTAAGCAACCACAAGCAACCTTCTTCCCAGCGAACATTGCAATGATGGATGATCTCAATAGGCTGGTAAGTTATCAACAGCAATTCTACAGTTTCCCCAATCAGTTCTCTAGTTTGCTGATGCAACCACCACCTGTGGCTCTAAACTCGCTACCCATCTCACTTCCAACCGCCTTCTCTGAACGACAGTGGGAATGGAATCCAACCCCTGAGCCTGAGGCTGAGGCTGAGGCCAACCGAGAGGACAATAACACGGCCTTCAAGTAA 1119 0.4763 MTIAAATSSVTMSLSMSQNHSHDDTINDDNNKPDDHAHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGLRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSHSDIKNYKPNETVHLNMGFVGHPQKIDHQKLMNESSSSTSTAAGSDVTLGGLIPKHNAYRTLGLPAVPVEEILMQQSKQPQATFFPANIAMMDDLNRLVSYQQQFYSFPNQFSSLLMQPPPVALNSLPISLPTAFSERQWEWNPTPEPEAEAEANREDNNTAFK. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05524 372 ProSiteProfiles NAC domain profile. 41 188 IPR003441 GO:0003677|GO:0006355
Seca5g05524 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 39 267 - -
Seca5g05524 372 Gene3D NAC domain 50 191 IPR036093 GO:0003677|GO:0006355
Seca5g05524 372 FunFam NAC domain-containing protein 35 50 191 - -
Seca5g05524 372 MobiDBLite consensus disorder prediction 348 372 - -
Seca5g05524 372 SUPERFAMILY NAC domain 41 187 IPR036093 GO:0003677|GO:0006355
Seca5g05524 372 Pfam No apical meristem (NAM) protein 43 167 IPR003441 GO:0003677|GO:0006355
Seca5g05524 372 MobiDBLite consensus disorder prediction 14 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05524 Seca-Chr5 112017746 112019915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05524 5 204 NAC Transcription Factor Family AT2G02450 76.526 5.09e-114 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca5g05524 NAM 3.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05524 - - gmx:100812779 484.182