Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05515 ATGGCTTCAAATCATATATCAGCTGCAGGGGCAACCAATGATGCTTTATACAAAGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCTCGTGAAGGGGAGAGAGTTTATTATTTCCCACAAGGTCATATGGAACAGCTTGAGGCATCTATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATATTCATCTTCGGGCTGAACCTGAAACAGATGAAGTGTATGCACAGATAACTTTGCTTCCTGAAGCAGATCAAAGCGAGGTGACAAGCCCAGATGACCCTCTGCCTGAACCTCCAATATGTACTGTTCATTCATTTTGCAAGACACTTACTGCTTCTGACACTAGCACTCATGGGGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTTTGCCACCATTGGATATGACACAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGGCATATTTTTCGAGGTAGGGAGCTTGGATGTTCTATTTCCCCCTTATTTTTGGGTGAAAATGGAGAGCTCCGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAAGCAACATGCCTTCTTCTGTTATATCTAGTCACAGTATGCATCTTGGTGTTCTGGCCACTGCATCTCATGCCATTTCAACTGGAACATTGTTTTCTGTATTTTACAAGCCCAGGTCTTGTATTTAA 750 0.4333 MASNHISAAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNIHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPEPPICTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGRELGCSISPLFLGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRSCI. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05515 249 CDD B3_DNA 119 180 IPR003340 GO:0003677
Seca5g05515 249 Gene3D - 118 186 IPR015300 -
Seca5g05515 249 SUPERFAMILY DNA-binding pseudobarrel domain 110 232 IPR015300 -
Seca5g05515 249 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 248 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05515 Seca-Chr5 111899909 111903573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05515 2 247 B3 DNA Binding Superfamily AT1G59750 77.068 1.06e-143 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05515 K14486 - gmx:100793224 452.981