Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05513 ATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGATTCAGTGGTACAATTGTGGGTGTTGAAGATAATAAATCATCTGTCTGGGCTGATTCCGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCATCATCAATTCTGCGACCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACCCCTCCTGCAAATTCCCAGCCAACCCAAAGAAACAAGAGAACACGGCCACCCATTCTACCTTCAACAATGCCTGATTCTTCTCTGCAAGGCATATGGAAATCTCCAGTTGAATCTCCACCTTTCTCTTATCGTGACCCCCAACATGGACGAGATCTCTATCCATCACCCAAATTCAATTCTACTGCAAGCTTTGTTGGTTTTGGCGGGAATAGCTCCGCAGCCTCTGCTTCTAACAAGTCAATATATTGGTCTAGTAGGATGGAAAACTCAACAGAATCTTTTTCACCTGTAGCACTTAAAGAATCTGGTGAGAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGTTACGTGAGAATTCTAATGCAGAAGAAAGTCTTCCAACAGTCACTTTGTCTGGAAGGATGGGTGATGATAGGTCTGTTCCATCTTTGGATGCGGAGTCTGACCAGTATTCTGAACCATCAAATGTTAATCGATCTGATATTCCTTCATGTAATGAAATTATTTATGATGCAACTTTGATATTATTCCAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACTCGATTTGATGGATATGAGGATCTGCTTAGGAAATTGGAAGAGATGTTCGACATCAAGGGTGAGCTCTGTGGATCCACAAAAAAATGGCAGGTTGTCTACACTGACAATGAAGATGATATGATGATGGTTGGAGATGATCCATGGCTTGAATTTTGTAGCGTTGTGAGGAAAATTTTCATCTACACAGCAGAGGAGGTGAAGAAGCTTTCACCCAAAATAGGTCTTCCAATCAATGAAGAAGGTAAACCAAGCAAACTGGATTCAGAAGCAGTAGTCAATCCCGAGGACCAGTCATCTATTGTGGGGCCTGGTTGCTAA 1110 0.4252 MRFKMRFEGDEVPERRFSGTIVGVEDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPANSQPTQRNKRTRPPILPSTMPDSSLQGIWKSPVESPPFSYRDPQHGRDLYPSPKFNSTASFVGFGGNSSAASASNKSIYWSSRMENSTESFSPVALKESGEKRQGTGNGCRLFGIQLRENSNAEESLPTVTLSGRMGDDRSVPSLDAESDQYSEPSNVNRSDIPSCNEIIYDATLILFQVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKGELCGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSVVRKIFIYTAEEVKKLSPKIGLPINEEGKPSKLDSEAVVNPEDQSSIVGPGC. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05513 369 Gene3D - 243 334 - -
Seca5g05513 369 ProSiteProfiles PB1 domain profile. 245 338 IPR000270 GO:0005515
Seca5g05513 369 MobiDBLite consensus disorder prediction 66 100 - -
Seca5g05513 369 MobiDBLite consensus disorder prediction 194 229 - -
Seca5g05513 369 FunFam Auxin response factor 1 68 - -
Seca5g05513 369 Pfam Auxin response factor 1 41 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca5g05513 369 SUPERFAMILY CAD & PB1 domains 245 322 - -
Seca5g05513 369 Pfam AUX/IAA family 242 335 IPR033389 -
Seca5g05513 369 MobiDBLite consensus disorder prediction 344 369 - -
Seca5g05513 369 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 334 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca5g05513 369 Gene3D - 1 68 - -
Seca5g05513 369 MobiDBLite consensus disorder prediction 62 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05513 Seca-Chr5 111896060 111899576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05513 1 363 B3 DNA Binding Superfamily AT1G59750 55.968 2.45e-127 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05513 K14486 - gmx:100793224 616.69