Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05506 ATGATGTCTGAAGAGGCTGGATCCATGTTGGTAGTGTATGATGATCCCTCTGACCAACACTCACTATCGTTGGGTGATACAAGCAGCACAGAGGAGTCACCTGATCAAACCAGGCTCTCCTTGGAAACAACTAATGATGCTATTCCATATATTGGTCAAAGGTTTGCCACTCATGATGCTGCTTATGAATTCTATAGTGAATTTGCCAAGAGGTGCGGCTTCTCAATTCGACGTCACCGTACAGAGGGAAAAGATGGGGTTGGAAAAGGACTTACTAGACGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGTCAAAACATCAACTGAAAGTAAACCTCAAAGAAATAGAAAATCTTCTCGATGTGGGTGTCAGGCTTACATGCGGATAAGCAAAGCAACAGAATTTGGAGCTCCAGAATGGCGTGTGACTGGATTTGCTAACCACCATAATCATGAACTTCTAGAACCAAATCAAGTTCGATTCCTTCCTGCATACAGGACTATCTCTGATGCTGACAAAAACCGAATCCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGACTTATGGAGCTCGAGAAGTGTGTGGAACCTGGATATTTGCCTTTTACTGAAAAGGATGTAAGGAATTTACTCCAGTCATTTAGGAAATTAGATCCAGAGGAAGAAAGCTTAGATTTATTAAGAATGTGCAGAAATATTAAGGAGAAAGATCCTAATTTTAAATTTGAGTACACACTTGATGCAAACAACCGTTTGGAGAATATTGCCTGGTCATATGCCTCATCAATCCAATTGTACGATATGTTTGGTGATGCTGTGGTGTTTGATACAACACATCGCCTGACTGCATTTGACATGCCGCTAGGGATATGGGTTGGAATTAATAATTATGGAATGCCTTGCTTTTTTGGCTGTGTGCTTCTACGAGATGAAACTGTCAGATCATTTTCCTGGGCAGTGAAGGTTTTCTTAGGGTTTATGAATGGGAAGGCTCCACAGACTATATTAACTGATCAAAATATATGTCTCAAAGAAGCACTATCCACAGAAATGCCAGCAACAAAACATGTTTTCTGCATATGGATGATAGTAGCAAAGTTTCCATCTTGGTTTAATGCTGTTCTTGGGGAACGATACAATGAATGGAAGGCTGAATTTTATAGACTTTATAATCTTGAGTCAGTTGAGGATTTTGAACTAGGCTGGAGGGAAATGGTTTGTTCCTTTGGGCTGCATTCCAATCGGCACATGGTTAATTTGTATAGCTCACGGTCACTTTGGGCATTGCCATTTTTGAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAATGCTTTCATTCAACGGTTTCTGAGTGCACAGACACGGCTAGCTCACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACAATGCAGCAGAATCTCCAAAATGTTTGCCTCAAAACAGGTGCCCCCATGGAATCACATGCTGCCACCGTCCTCACTCCCTATGCCTTTTCAAAGCTTCAAGAACAACTTGTGTTGGCTGCACACTATGCGTCTTTTTCAATTGAAGATGGTTTTCTTGTGAGACACCACACAAAAGCTGAAGGAGGTCGGAAAGTTTATTGGTCCCCTCAGGAGGGAATTATAAGTTGCAGCTGCCACCAGTTTGAATTTTCTGGAATTCTATGTAGGCATTCTCTTAGAGTTCTTTCAACAGGAAATTGTTTTCAGATCCCAGATAGATATCTTCCCATTCGTTGGCGTCGAATGAGCATTCCCTCTTCTAAGCTTCTTCAAAATGCACCAAGTGATCATGCTGAAAGAGTTAAGTTATTACAAAATATGGTTTCATCTCTGATTACAGAATCTGCTAAATCTAAGGAACGATTAGATATTGCAACAGAACAAGTTTCCATCCTTCTGTCTCGCATAAGAGAGCAACCATTTTCATTACAAGGTAGCAGGGATATTTCTTCCATTAATAGGAATCTTTGA 2043 0.4072 MMSEEAGSMLVVYDDPSDQHSLSLGDTSSTEESPDQTRLSLETTNDAIPYIGQRFATHDAAYEFYSEFAKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKATEFGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCRNIKEKDPNFKFEYTLDANNRLENIAWSYASSIQLYDMFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLRDETVRSFSWAVKVFLGFMNGKAPQTILTDQNICLKEALSTEMPATKHVFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATVLTPYAFSKLQEQLVLAAHYASFSIEDGFLVRHHTKAEGGRKVYWSPQEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDRYLPIRWRRMSIPSSKLLQNAPSDHAERVKLLQNMVSSLITESAKSKERLDIATEQVSILLSRIREQPFSLQGSRDISSINRNL. 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05506 680 Pfam FAR1 DNA-binding domain 63 156 IPR004330 -
Seca5g05506 680 Pfam SWIM zinc finger 561 588 IPR007527 GO:0008270
Seca5g05506 680 MobiDBLite consensus disorder prediction 1 38 - -
Seca5g05506 680 MobiDBLite consensus disorder prediction 20 38 - -
Seca5g05506 680 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 45 654 IPR031052 GO:0006355
Seca5g05506 680 Pfam MULE transposase domain 279 371 IPR018289 -
Seca5g05506 680 ProSiteProfiles Zinc finger SWIM-type profile. 554 590 IPR007527 GO:0008270
Seca5g05506 680 SMART 26again6 565 592 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05506 Seca-Chr5 111803655 111807617 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g05506 MULE 1.5e-17 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05506 - - gmx:100810717 1332.01