Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05504 ATGGGTGCAATGTGGCAATCTGTGTCCCCTAAAGTTAATGAATGGATGAAGGGTAAAGTGGTTGGATGTGGATCTTTTGGCACTGTCCATTTGGCCATGAACAAATCCACCGGTGGACTCTTCGTTGTGAAATCATCACATTCAGGGGCTGGGTGTGAGGCTTTGGATAATGAGGTCAGAATTCTAAAGACTCTAAAATCATCACCGTACATTGTCCAATGTTTAGGGACAGAGGAGGAGGAGGAAGGTAATCTCAATGTTTTTATGGAGTATATGGCAGGTGGTAGTTTGGCAGATGTGGCACAAAAGTTTGGTGGTTCATTGCATGAAGAGGTGGTTCGGGTGTATACTAGAGAAATTCTTCATGGGTTAAAGCATCTTCACCAACGTGGTATTGTGCATTGTGACCTTAAGTGCAAGAATGTGCTCTTGGGCTCATCTGGGAACATCAAGCTAGCGGATTTTGGATGTGCAAAAAGGGTAAAGGACTTGAAGGGGAAGGGGAAAGGGAAGGGTTTGGTTTGTATTGGTGGCACTCCTCTATGGATGGCTCCTGAAGTATTGAGAAATGAGATGCTTGATTTTACTGCAGATATATGGTCTTTGGGATGTACAGTCATTGAAATGGCTACTGGTAACCCTCCTTGTTGGGCTGAAGAGGGTTCAGATCCAAATCCCATGGCTACCATACTCAAGATTGCTCATGGAGATGGACATGGGGATGGGATACCTCAGTTTCCAACCCATTTCTCTAACCAAGGTTTGGATTTCTTGAGCAGGTGTTTGGTGAGAGAACCCAATAAGAGGAGTACGACCGAGGAGTTACTTGCTCATCCATTTGTTTCTTCAACAACTCAGAGTCAGAGTCAGAAAGAATATGCTTCCTCCCCAGCAGGTGTCTTGGAGGTTCAGGATTTTGATGAATTAGAAAGTCCACCAGGAAATGATTTCTCAATCAGAAACTCATTTTCGTACTATGATGCTCCAGAACCAATGTGGCAACTGGAGGAATTAGGGTCATCAGGGAATTGGATTACTGTTAGGTGA 1047 0.4422 MGAMWQSVSPKVNEWMKGKVVGCGSFGTVHLAMNKSTGGLFVVKSSHSGAGCEALDNEVRILKTLKSSPYIVQCLGTEEEEEGNLNVFMEYMAGGSLADVAQKFGGSLHEEVVRVYTREILHGLKHLHQRGIVHCDLKCKNVLLGSSGNIKLADFGCAKRVKDLKGKGKGKGLVCIGGTPLWMAPEVLRNEMLDFTADIWSLGCTVIEMATGNPPCWAEEGSDPNPMATILKIAHGDGHGDGIPQFPTHFSNQGLDFLSRCLVREPNKRSTTEELLAHPFVSSTTQSQSQKEYASSPAGVLEVQDFDELESPPGNDFSIRNSFSYYDAPEPMWQLEELGSSGNWITVR. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05504 348 Pfam Protein kinase domain 17 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05504 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Seca5g05504 348 Gene3D Transferase(Phosphotransferase) domain 1 8 312 - -
Seca5g05504 348 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 13 305 - -
Seca5g05504 348 SMART serkin_6 15 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05504 348 CDD STKc_MAPKKK 14 281 - -
Seca5g05504 348 SUPERFAMILY Protein kinase-like (PK-like) 13 298 IPR011009 -
Seca5g05504 348 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Seca5g05504 348 ProSiteProfiles Protein kinase domain profile. 15 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05504 Seca-Chr5 111797554 111798600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05504 15 348 MAP Kinase Kinase Kinase AT4G26890 39.496 5.53e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca5g05504 Pkinase 5.7e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05504 K20716 - gmx:100798237 430.254