Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05502 ATGGGTTGTATATGCTCCAAAGGAAAATCTGCAAATCAATATGTTGCTGACAACCATCTCAGAAAAGACAAAGAATTGAAGGCAAACAGATCCTCAAACCATTTGGGCACAGCTGTAACAGAGAATGATGCTACTGCACGCCTCATATCCAACACGCCTCACGCTGGAACTGAAGGTTCCTCGGATGAAGGGGAGAAGGAAAAGAATGCTGCAATGGGATCAAACATGAGTTTTGCAAGTGGAGGAGGACAAGTACAAGGACAACCTAGGGTCTCCAGGATATATAGTGTAACTAGAGGGGAAAGAGGAGCACAGGTTCTTGCTGGCTGGCCTTCCTGGCTCACTGCAGTTGCAGGAGAAGCCATTAGTGGTTGGATACCTCGCAGAGCAGACTCATTTGAGAAGTTGGATAAGATTGGGCAAGGAACTTACAGCAGTGTTTATAGAGCTCGTGATCTTGAAACAAATAAAATTGTCGCATTGAAGAAGGTTCGATTCGCTAACATGGACCCAGAAAGTGTTCGTTTTATGGCAAGAGAAATTCTTGTGCTGCGAAGACTTGATCATCCAAATGTCATGAAGCTTGAAGGCATGATTACTTCAAGGGTTTCTGGTAGCTTGTACCTTGTTTTTGAATATATGGAGCATGATCTTGCAGGCCTTGCAGCAATACCAGGCATCAAGTTTACTGAAGCACAGATCAAGTGTTATATGCAACAGCTTCTTCGTGGTCTTGAGCATTGTCACAGCCGTGGTGTTATGCACCGCGACATCAAGGGATCCAATCTTCTGCTTGACAATAATGGCAATCTGAAGATTGGTGATTTTGGGCTTGCCACTTTGTTTCAGCCATCTCAAGGGCAGCCTTTAACAAGTCGTGTAGTAACCTTGTGGTACCGACCACCTGAACTTTTACTTGGAGCTACAGATTATGGAGTTGCTGTGGATTTGTGGAGTGCTGGTTGTATTCTTGCAGAATTGTTTGCTGGGAAGCCTATAATGCCTGGAAGAACAGAGGTGGAGCAACTTCATAAAATCTTCAAACTTTGTGGATCTCCTTCTGAAGAATATTGGAAGAAGTCAAAGCTACCACATGCAACAATTTTCAAGCCTCAACAACCTTACAAACGTGTTGTTTCTGAGACATTCAAGGATTTTCCTTCATCAGCACTGAGCCTCTTGGAGGTCCTACTTGCTATAGAACCAAAAGATAGAGGAACTGCATCTTTAGCCCTTCAAAATGAGTTCTTCACAGCAAAGCCACTTCCTTGTGATCCATCAACTTTGCCAAAATACCCACCAAGTAAAGAGTTTGATGCCAAACTTCGAGAAGAGGAAGCTAGAAGACAAAAAGCTGCAAATAAAGGACATGGACAAGAATCGGTTAGCAGGAGTTCAAGAGAGTCTAAAGCTAGGCCAGCACCTGATGCTAATGCTGAGTGTCAGGCATCAATAGAGAGACAAGGACAGTGTAATTCTAAGTGCATTAGTGATAAGTACAATCCTGAAGAGGATGGCGGTTGTGGCTTCCCTCTTGAACCTACAAAATCAAGAGCACTCAATGTTTTCTCTCATTCTGGCCAGTCAATGCATCCAAGTGCGTATGGATCCTCACGCAATATGAATTTAAAAGAGGAAGATGTTCTTACTGGCCCTAATCATGTCTTTACATCAAGAAACCCTGAGTTGAGAAAACAAAAATCCTACTGGCATGGCAGCACTGCAAAATTGTCAAGATTTTCTAATTCAGTTGCAACTCGAGGTAATTCACGGCTTGATATGAGTGGAGACTGTAGTGTGAATTCAGAGTGGCCAGAGGATCTCTTTGGTATGAGATATAGTCATCTAGCCGATGGTGAGTCTAGCCAATTGCTGGATGGACCCAAGTCTTCATGCAAGAAGGACTTCCATCTACTTGGGAAGGATCGTGCCATGAGCTATGCTACCAAAAGCCGCATCCACTATTCGGGACCATTGCTGCCTCCAGAGGATAATCTTGAAGAAATGCTTAAGGAGCACGAAAGGCAAATCCAACAGGCTGTCCGCAAAGCTCGTTTGGATAAGGACAAGATAAAAAAGGCTGACAGTGAGAATAGCCTAACTGAATCACTATTTCACCATGTGAGAAATCACAGCTGA 2139 0.4367 MGCICSKGKSANQYVADNHLRKDKELKANRSSNHLGTAVTENDATARLISNTPHAGTEGSSDEGEKEKNAAMGSNMSFASGGGQVQGQPRVSRIYSVTRGERGAQVLAGWPSWLTAVAGEAISGWIPRRADSFEKLDKIGQGTYSSVYRARDLETNKIVALKKVRFANMDPESVRFMAREILVLRRLDHPNVMKLEGMITSRVSGSLYLVFEYMEHDLAGLAAIPGIKFTEAQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLLDNNGNLKIGDFGLATLFQPSQGQPLTSRVVTLWYRPPELLLGATDYGVAVDLWSAGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRVVSETFKDFPSSALSLLEVLLAIEPKDRGTASLALQNEFFTAKPLPCDPSTLPKYPPSKEFDAKLREEEARRQKAANKGHGQESVSRSSRESKARPAPDANAECQASIERQGQCNSKCISDKYNPEEDGGCGFPLEPTKSRALNVFSHSGQSMHPSAYGSSRNMNLKEEDVLTGPNHVFTSRNPELRKQKSYWHGSTAKLSRFSNSVATRGNSRLDMSGDCSVNSEWPEDLFGMRYSHLADGESSQLLDGPKSSCKKDFHLLGKDRAMSYATKSRIHYSGPLLPPEDNLEEMLKEHERQIQQAVRKARLDKDKIKKADSENSLTESLFHHVRNHS. 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05502 712 SUPERFAMILY Protein kinase-like (PK-like) 127 424 IPR011009 -
Seca5g05502 712 MobiDBLite consensus disorder prediction 680 712 - -
Seca5g05502 712 Coils Coil 435 455 - -
Seca5g05502 712 Gene3D Transferase(Phosphotransferase) domain 1 221 457 - -
Seca5g05502 712 ProSiteProfiles Protein kinase domain profile. 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05502 712 Gene3D Phosphorylase Kinase; domain 1 128 220 - -
Seca5g05502 712 FunFam probable serine/threonine-protein kinase At1g54610 216 457 - -
Seca5g05502 712 FunFam probable serine/threonine-protein kinase At1g54610 120 215 - -
Seca5g05502 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Seca5g05502 712 MobiDBLite consensus disorder prediction 42 68 - -
Seca5g05502 712 MobiDBLite consensus disorder prediction 42 58 - -
Seca5g05502 712 Pfam Protein kinase domain 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05502 712 SMART serkin_6 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05502 712 PANTHER CELL DIVISION PROTEIN KINASE 131 423 - -
Seca5g05502 712 Coils Coil 663 690 - -
Seca5g05502 712 MobiDBLite consensus disorder prediction 442 474 - -
Seca5g05502 712 MobiDBLite consensus disorder prediction 442 484 - -
Seca5g05502 712 CDD STKc_CDK9_like 133 417 - -
Seca5g05502 712 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05502 Seca-Chr5 111780961 111786160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05502 125 455 Core Cell Cycle Gene Families AT5G10270 51.445 3.43e-117 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca5g05502 Pkinase 1.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05502 - - gmx:100805055 1118.61