Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05498 ATGGCTCTGATCCTTCATGCTACGAAGACAAACAAAAATGGTTATAAGACTCTCATTGCCGCGGAGTACTGCGGTGTCCAAGTTCAATTGGCACCAAATTTTGAGATGGGTGTCTCAAATAAAACTTCCGAATTTCTCAAGATGAATCCTATTGGAAAGGTTCCTGTGCTACAAACGCCAGATGGTGCAGTCTTCGAGAGCAATGCTATGGCTCGTTACGTTGCTCGATTGAAGGGTGATAACACTTTGTATGGATCTTCTCTCATTGATCAGGCCCACGTTGACCAGTGGATTGATTTTGCATCGCTGGAGATTGATGCTAAACTTATGACTATGTACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCATTTGGGGCTTTGAACACTCACCTTGCCACCAATACTTACCTGGTTGGGCATTCTGTGACCCTTGCTGACATCATAATGACGTGCAATTTGTATTTAGGTTTCACTATGCTATTGGTCAAGAGCTTCACCTCTGAGTTTCCTCACGTTGAGAGATACTTTTGGACCCTGGTCAATCAGCCAAACTTCCGAAAGATATTAGGTCAGATTAAGCAGACTGAAGCTGTTCCACCTATTCAATCTGCAAAGAAACCTTCCCAACCTAAGGAATCTAAACCCAAGGCTAAAGATGAACCAAAGAAAGTGGCTAAACCAGAGCCAGAAAAGCCCAAAGAGGAAGTAGAAGAGGAGGCACCCAAGCCTAAGCCCAAGAATCCTCTTGATCTCCTTCCTCCAAGTAAGATGATACTGGATGAGTGGAAAAGACTCTACTCTAACACTAAGACCAACTTCCGTGAGGTTGCAATCAAAGGATTTTGGGACATGTATGATCCAGAGGGATATTCTCTCTGGTTCTGTGATTACAAATACAATGATGAGAACACCGTTTCCTTTGTGACTTTGAACAAGGTTGGTGGGTTTCTTCAGCGGATGGATCTGGCTCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCAGAGCCTCCATTTAAAGTGAAGGGGTTGTGGCTTTTCCGTGGCCAAGAAATTCCGAAATTTGTGATTGATGAATGCTATGACATGGAGCTCTACGACTGGATAAAGGTTGACATCTCTGATGAAACTCAGAAGGAGCGTGTCAATCAGATGATTGAAGATTGTGAACCATTTGAGGGAGAGGCTCTTTTGGATGCAAAATGCTTTAAGTGA 1260 0.4365 MALILHATKTNKNGYKTLIAAEYCGVQVQLAPNFEMGVSNKTSEFLKMNPIGKVPVLQTPDGAVFESNAMARYVARLKGDNTLYGSSLIDQAHVDQWIDFASLEIDAKLMTMYLPRLGFAPYLPPAEEAAISALKRAFGALNTHLATNTYLVGHSVTLADIIMTCNLYLGFTMLLVKSFTSEFPHVERYFWTLVNQPNFRKILGQIKQTEAVPPIQSAKKPSQPKESKPKAKDEPKKVAKPEPEKPKEEVEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVIDECYDMELYDWIKVDISDETQKERVNQMIEDCEPFEGEALLDAKCFK. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05498 419 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 215 IPR010987 -
Seca5g05498 419 FunFam Elongation factor 1-gamma 1 259 419 - -
Seca5g05498 419 SUPERFAMILY GST C-terminal domain-like 73 213 IPR036282 -
Seca5g05498 419 CDD GST_N_EF1Bgamma 5 77 - -
Seca5g05498 419 FunFam Elongation factor 1 gamma 80 216 - -
Seca5g05498 419 SUPERFAMILY Thioredoxin-like 2 85 IPR036249 -
Seca5g05498 419 Pfam Elongation factor 1 gamma, conserved domain 258 366 IPR001662 GO:0003746|GO:0006414
Seca5g05498 419 SFLD Glutathione Transferase (cytosolic) 5 190 IPR040079 -
Seca5g05498 419 CDD GST_C_EF1Bgamma_like 90 210 - -
Seca5g05498 419 MobiDBLite consensus disorder prediction 213 266 - -
Seca5g05498 419 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 259 419 IPR036433 GO:0003746|GO:0006414
Seca5g05498 419 Gene3D Glutaredoxin 1 74 - -
Seca5g05498 419 Gene3D - 80 214 - -
Seca5g05498 419 SFLD Main (cytGST) 5 190 - -
Seca5g05498 419 FunFam Elongation factor 1B gamma 1 74 - -
Seca5g05498 419 SUPERFAMILY eEF1-gamma domain 259 419 IPR036433 GO:0003746|GO:0006414
Seca5g05498 419 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 419 IPR044628 GO:0004364
Seca5g05498 419 SMART EF1G_2 258 366 IPR001662 GO:0003746|GO:0006414
Seca5g05498 419 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 259 419 IPR001662 GO:0003746|GO:0006414
Seca5g05498 419 Pfam Glutathione S-transferase, C-terminal domain 128 197 IPR004046 -
Seca5g05498 419 Pfam Glutathione S-transferase, N-terminal domain 9 76 IPR004045 -
Seca5g05498 419 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Seca5g05498 419 MobiDBLite consensus disorder prediction 223 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05498 Seca-Chr5 111761683 111764596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05498 1 419 Eukaryotic Initiation Factors Gene Family AT1G57720 73.747 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05498 K03233 - gmx:100795680 695.271