Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05493 ATGGCGTCTGCTAGCCTTGGAAATGGTGGCGTCGGTAGTTCCAGGTCTGCCTTAAGAGGTTCTTCTAGTTCTGTCGATTGGCTTGGCAGAGAGATGCTTGAGATGAGGTTGAGGGACAAGGTCGACCACGATGAAGACAGAGATAGTGAGCCTGACATCATTGATGGTGTGGGTGCTGAAACAGGACATGTGATAAGAACCAGCATTGGTGGCCGAAATGGTCAGACTAAGCAGAATGTTAGTTATATTGCGGAGCACGTAGTTGGAACAGGCTCTTTTGGTGTTGTTTTTCAAGCAAAATGTAGAGAAACTGGAGAGATTGTAGCCATCAAGAAGGTTCTCCAGGACAAGCGCTACAAGAATAGAGAGTTACAGATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTAAGGCATTGTTTCTTTTCAACGACCGACAAAGAAGAACTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACTGTGAATCGAATTGCAAGGAACTATAGCAGGATTAACCAGAGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGATATGCAGGGCCCTTGCTTATATACATAACTGCATTGGCATCTGTCATCGTGACATCAAACCTCAGAACCTACTTGTGAACCCACACACCCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAGTGTTGGTAAGGCTTGTTCTAATTCATCAGGTGAAAGGAGAACCCAATGTTTCTTACATCTGTTCAAGATACTATCGAGCCCCTGAACTTATATTTGGTGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTGATGGCTGAGTTGCTTCTTGGACAGCCCTTGTTCCCTGGAGAGAGTGGAGTTGATCAACTAGTTGAAATCATCAAGGTTTTGGGAACACCCACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAGTTTAAGTTTCCGCAGATAAAACCTCATCCTTGGCACAAGGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTGGAAGCTTGCATTCATCCCTTCTTTGATGAATTGAGGGACCCGAACACCCGCCTTCCTAATGGTCGCCCACTTCCTCCACTGTTTAATTTTAAATCTCAGGAACTTTCTGGGATACCCCCTGATGTCATCAATCGGCTTATTCCGGAGCATGCTCGCAAACAGAACTTATTTATGGCTTTGCACACCTAG 1287 0.4367 MASASLGNGGVGSSRSALRGSSSSVDWLGREMLEMRLRDKVDHDEDRDSEPDIIDGVGAETGHVIRTSIGGRNGQTKQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVRLVLIHQVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKSQELSGIPPDVINRLIPEHARKQNLFMALHT. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05493 428 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 50 420 - -
Seca5g05493 428 CDD STKc_GSK3 77 377 IPR039192 -
Seca5g05493 428 MobiDBLite consensus disorder prediction 1 21 - -
Seca5g05493 428 SMART serkin_6 82 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05493 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Seca5g05493 428 Gene3D Phosphorylase Kinase; domain 1 67 161 - -
Seca5g05493 428 SUPERFAMILY Protein kinase-like (PK-like) 81 401 IPR011009 -
Seca5g05493 428 FunFam Shaggy-related protein kinase kappa 162 418 - -
Seca5g05493 428 Gene3D Transferase(Phosphotransferase) domain 1 162 418 - -
Seca5g05493 428 Pfam Protein kinase domain 84 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05493 428 ProSitePatterns Protein kinases ATP-binding region signature. 88 112 IPR017441 GO:0005524
Seca5g05493 428 FunFam Glycogen synthase kinase-3 beta 66 161 - -
Seca5g05493 428 ProSiteProfiles Protein kinase domain profile. 82 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05493 Seca-Chr5 111720958 111728889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05493 88 382 Core Cell Cycle Gene Families AT1G76540 34.106 5.00e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca5g05493 Pkinase 8e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05493 K03083 - jre:108983720 817.379