Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05488 ATGATCCCCTTGACCTTCATTGTTTTCACTCTGTTTTCTCTGTTTCTGGGTTCCTCTGTTTCTGCTTCATCCTTGCTCAGTGATTTCCATGTCCTAGTCTCACTCAAAGAAGAATTCCAATTCCCAGACCCAATTCTAAACACTTGGAACACTGCCAATTTCAGCTCAGTTTGTTCTTCATGGTTTGGAATTCAATGCCACCGGGGACGAGTTGTGTCGGTGGACTTAACAGATTTGAATCTATTTGGCTCTGTTTCTCCTTCAATTTCAACACTTGATAGGCTCACACACCTTTCCCTTGCAGGAAACAACTTCACTGGCACCATTCACATCACCAACTTGACCAACCTTCAATTTCTCAACATCTCCGATAACCAGTTCAGTGGTGACTTAGATTGGGACTATTCCACCATGGACAACTTACAAGTTGTTGATGCCTATAACAATAACTTAACTTCCTTGCTTCCTTTGGGGGTTCTGAATTTGAAGAGGCTTAGGTACTTGGATCTTGGTGGGAACTTTTTCTATGGTGAAATCCCAAAAAGCTATGGAAATTTAGTTGGTCTGGAATATCTCTCACTAGCAGGAAATGACATTCGTGGGAAAATCCCAGGTGAGTTGGGCAATCTGAGTAACCTGAGGGAGATTTACTTGGGCTATTACAATTCCTTTGAAGGTGGGATTCCAGTGGAGTTTGGAAAGTTGGTAAATTTAGTTCACATGGATCTCTCAAGCTGTGATTTGGATGGTCCAATTCCAAGAGAGTTAGGAAACTTGAAGGAGCTAGACACCCTTTACTTGCATATCAATCAGCTTTCAGGTTCTATACCAAAACAGCTAGCCAACTTGACTAATTTGGTGAACCTTGATCTCTCCAGCAATGCACTCACTGGGGAAATCCCATTTGAGTTCATCAACCTTAAAAAGCTCAAGCTTTTCAATCTTTTCCTCAACAGGTTACATGGGTCCATACCAGACTACATTGCAGACTTGCCAGATTTAGAGACACTTGGGCTGTGGATGAACAACTTCACAGGAGAAATTCCACAGAACCTTGGTCTGAGTGGGAAGCTTCAAGTGCTTGATTTGTCCTCCAATAAGCTCACTGGTTTCATTCCTCCTCACCTATGTTCCTCAAACCAGCTCAGGATTTTGATTCTTCTCAATAACTTCCTCTTTGGACCCATACCTGAAGGTGTGGGAACATGTTACAGTCTCACTAGAGTGAGATTAGGACAGAATTACCTGAATGGTAGCATTCCAAATGGATTTCTTTACCTTCCTAAGCTAAATCTAGCTGAGTTACAGAACAATTACTTGTCAGGAACTTTGCCAGAAAATGGTAATAGTTCCTCTCAGCCTGTTCATTTAGAACAACTTGATTTGTCAAACAATGCCTTGTCTGGTCCTTTACCATATTCACTCTCAAATTTCTCCTCCATTCAAATCCTTCTTCTCAGTGGAAACCAGTTCTCAGGTCCAATCCCACCCTCCATTGGAGGACTCAATCAAGTGCTTAAGCTTGACCTTAGCAGAAATTCATTATCCGGAGAAATTCCACCTGAAATTGGGTACTGTGTCCATCTCACCTACCTTGACATGAGCCAGAACAACCTCTCAGGTTCCATCCCACCTGTGATTTCCAATATCCGCATTTTAAATTACTTGAACTTGTCAAGAAACCATTTGAGCCAAACCATCCCAAGGTCAATTGGTTCCATGAAAAGCCTCACTGTTGCTGATTTCTCCTTCAATGAATTCTCTGGTAAATTGCCAGAGTCAGGGCAATTTGGCTTCTTCAATGCCTCATCTTTCGCGGGCAATCCTCAACTTTGCGGTTCTCTATTGAACAATCCTTGTAATTTGAGCAGAATCACATCCCCACCTGGAAAAAACGCTTCAGATTTTAAGCTAATATTTGCCCTTGGCCTATTGATATGTTCCTTAGTATTTGCCATTGCAGCCATTATAAAGGCCAAGTCTTTCAAAAAGAAAGGTCCAGGTTCATGGAAGATGACTGCATTCCAAAAGGTGGAATTCACAGTTTCGGACATTCTTGAATGTGTGAAAGATGGGAATGTGATTGGAAGAGGAGGTGCTGGGATTGTTTACCATGGAAAAATGCCAAATGGGGTCGAAATTGCAGTGAAAAAGCTTCTTGGGTTTGGAGCAAACAGCCATGATCATGGCTTCCGAGCTGAAATTCAAACACTAGGAAACATAAGGCATAGAAACATAGTGAGGCTAGTTGCATTCTGCTCCAACAAAGAGACCAATCTGCTGGTGTATGAGTACATGAGGAATGGGAGCTTAGGGGAGTCATTGCATGGGAAAAAAGGTGCATTCTTGAGTTGGAACTTGAGGTACAAAATTTCCATTGACTCAGCTAAAGGACTCTGTTACCTTCACCATGATTGTTCACCTTTGATCGTCCACCGAGACGTGAAATCCAACAACATTTTGTTGAATTCCAATTTCGAAGCACACGTGGCTGATTTCGGCCTCGCTAAGTTCTTGGTGGATGGAGGCGCATCCGAGTACATGTCTTCCATTGCAGGCTCCTATGGCTACATTGCACCTGAATATGCTTATACATTGAGGGTGGATGAAAAGAGTGATGTTTATAGTTTTGGAGTGGTTCTATTAGAGCTTCTAACAGGGAAGAAACCGGTGGGGGATTTCGGGGAAGGAGTGGATCTTGTGCAAGGGTGCAAGAAAGCAACGAATGGTGGGCGCAAAGAAGAGGTTATGAACATAATTGATTCAAGACTAACGGTGGTGCCAAGAGAGGAAGCGATGCACATGTTGTTCATTGCCATGTTATGCTTACAAGAGAACAGTGTGGAGAGACCCACCATGAGGGAAGTCACACGTCCGTCTTGGGCGTTGACGGTGTCAGTGAAGCAGGCGAGGAAGCAAGAGAGCGCGAGGAGGAGAAGGAGGAGCAACGTAAGGATGCGCGTAACGGAGTCGCAGGCGCCGTTGTTGGTGAAGACAGGAGTGAGGATCTGGAATGCAAGGAGGGTGCCTGTGGGAAGCAGGTTGGCTAAGTTGGCTGTGCTGGTCAGAGCTTGA 3075 0.4384 MIPLTFIVFTLFSLFLGSSVSASSLLSDFHVLVSLKEEFQFPDPILNTWNTANFSSVCSSWFGIQCHRGRVVSVDLTDLNLFGSVSPSISTLDRLTHLSLAGNNFTGTIHITNLTNLQFLNISDNQFSGDLDWDYSTMDNLQVVDAYNNNLTSLLPLGVLNLKRLRYLDLGGNFFYGEIPKSYGNLVGLEYLSLAGNDIRGKIPGELGNLSNLREIYLGYYNSFEGGIPVEFGKLVNLVHMDLSSCDLDGPIPRELGNLKELDTLYLHINQLSGSIPKQLANLTNLVNLDLSSNALTGEIPFEFINLKKLKLFNLFLNRLHGSIPDYIADLPDLETLGLWMNNFTGEIPQNLGLSGKLQVLDLSSNKLTGFIPPHLCSSNQLRILILLNNFLFGPIPEGVGTCYSLTRVRLGQNYLNGSIPNGFLYLPKLNLAELQNNYLSGTLPENGNSSSQPVHLEQLDLSNNALSGPLPYSLSNFSSIQILLLSGNQFSGPIPPSIGGLNQVLKLDLSRNSLSGEIPPEIGYCVHLTYLDMSQNNLSGSIPPVISNIRILNYLNLSRNHLSQTIPRSIGSMKSLTVADFSFNEFSGKLPESGQFGFFNASSFAGNPQLCGSLLNNPCNLSRITSPPGKNASDFKLIFALGLLICSLVFAIAAIIKAKSFKKKGPGSWKMTAFQKVEFTVSDILECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGANSHDHGFRAEIQTLGNIRHRNIVRLVAFCSNKETNLLVYEYMRNGSLGESLHGKKGAFLSWNLRYKISIDSAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFLVDGGASEYMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGKKPVGDFGEGVDLVQGCKKATNGGRKEEVMNIIDSRLTVVPREEAMHMLFIAMLCLQENSVERPTMREVTRPSWALTVSVKQARKQESARRRRRSNVRMRVTESQAPLLVKTGVRIWNARRVPVGSRLAKLAVLVRA. 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05488 1024 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 766 980 - -
Seca5g05488 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672|GO:0006468
Seca5g05488 1024 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 335 624 - -
Seca5g05488 1024 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Seca5g05488 1024 Gene3D Ribonuclease Inhibitor 27 136 IPR032675 -
Seca5g05488 1024 Gene3D Transferase(Phosphotransferase) domain 1 766 988 - -
Seca5g05488 1024 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 137 222 - -
Seca5g05488 1024 SMART serkin_6 689 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05488 1024 Gene3D Phosphorylase Kinase; domain 1 654 765 - -
Seca5g05488 1024 Pfam Leucine Rich repeat 526 541 IPR001611 GO:0005515
Seca5g05488 1024 ProSiteProfiles Protein kinase domain profile. 689 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05488 1024 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 231 958 - -
Seca5g05488 1024 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 765 - -
Seca5g05488 1024 Gene3D Ribonuclease Inhibitor 222 319 IPR032675 -
Seca5g05488 1024 Gene3D Ribonuclease Inhibitor 137 221 IPR032675 -
Seca5g05488 1024 SUPERFAMILY Protein kinase-like (PK-like) 680 961 IPR011009 -
Seca5g05488 1024 SMART LRR_typ_2 550 574 IPR003591 -
Seca5g05488 1024 SMART LRR_typ_2 331 355 IPR003591 -
Seca5g05488 1024 SMART LRR_typ_2 138 161 IPR003591 -
Seca5g05488 1024 SMART LRR_typ_2 186 210 IPR003591 -
Seca5g05488 1024 SMART LRR_typ_2 259 282 IPR003591 -
Seca5g05488 1024 SMART LRR_typ_2 356 379 IPR003591 -
Seca5g05488 1024 SMART LRR_typ_2 283 307 IPR003591 -
Seca5g05488 1024 SMART LRR_typ_2 502 526 IPR003591 -
Seca5g05488 1024 Gene3D Ribonuclease Inhibitor 320 625 IPR032675 -
Seca5g05488 1024 Pfam Leucine Rich Repeat 357 377 IPR001611 GO:0005515
Seca5g05488 1024 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 223 328 - -
Seca5g05488 1024 FunFam Leucine-rich repeat receptor-like kinase 27 136 - -
Seca5g05488 1024 SUPERFAMILY RNI-like 73 417 - -
Seca5g05488 1024 Pfam Protein tyrosine and serine/threonine kinase 692 957 IPR001245 GO:0004672|GO:0006468
Seca5g05488 1024 SUPERFAMILY L domain-like 356 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05488 Seca-Chr5 111669991 111679341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05488 19 958 Receptor kinase-like Gene Family AT5G65700 56.799 0.0 1046
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca5g05488 PK_Tyr_Ser-Thr 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05488 - - rcu:8263279 1533.85