Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05475 ATGGAACTATCAGATTTGCAAAACAACAAGCAGAGCAGAGGCAATACTCATCCCCACCACCACCATCCCCAACAAGAATCCTCTTCCTCTCATTCCCAGCAACAACAACAACACCTTGTGGTCCCTTTCGATGGCAGACCATCCCCCTTCATCATGGGCTCCATCTCCATCCAACCTCCCTCCTCTTCTTCTTCCAATTCTTCTTCCTCATCCTCTTCTTCCGCTTCAGCCTCCGCCTCCGCCCCCACTCCTCACCTCATTGACGCCTCCTTAGCCATCGCCACCAGATCTGACCCTCCCACCCTCGATTCCGCCAAAAAGACCCAAATTCAACAGCAATTATCCATCTCAACCGCCGCCGCCCCCGTCACCACCGTCAACCCTCCCAAGCGATCCACCAAGGACCGGCACACAAAAGTCGACGGTCGAGGCCGGAGAATTCGAATGCCAGCGACGTGCGCCGCTAGGGTTTTCCAATTAACGAGAGAATTGGGGCACAAGTCAGACGGAGAGACGATCGAGTGGCTCCTACAGCAGGCGGAGCCGGCGATCATCGCGGCCACCGGAACCGGAACAATCCCGGCGAATTTCTCGACACTGAACGTGTCACTCCGGAGCAGCGGTTCGACGCTGTCTGCTCCGCCATCGAAGTCAGCACCTCACACGTTTCATGGAGCACTGGCACTGGCGCACCACCCTTACGAGGACGCGTTTCAGCACACAGCGTTGTTAGGGTTTCATCCTCAACAACAACAGCAACTTATGAGCGCTGATCAAATAGCAGAAGCGCTTCCAAGTGGAGGAGAATCAAGCGAGAATTATATGAGAAAACGGTATAGAGAAGATCTGTTCAAAGATGATGATGGTGAAAAGTATAACAACCAACAAAATGAAAGTGGTGATGCCTCTTCCCCAAAACCATTCAAAACCAACCTACACTTGCAAAAGCAACAACCACCAGATGGTGCTGCTGGTGGTTCTTCTTCTGGCCTTCTTCGTCCTTCCAATTTGCTACCTGCAACTGCCATGTGGGCCGTGGCACCTGCAACCGGTGCGACCGGTGGCAGTGGGAGTACTATCTGGATGCTTCCGGTCACTGCTGGTGCGGCTACTGCAACTTCCGAGAGCCAGACGATGTGGCCTTTTGCTGCTGCTGCTGGTGGTGGTGGGAACGCCACTTCAACTCCAACTCCGCTGCATTTTATGCCGAGGTTCAACCTTCCAGGTGGTCTTGAATTTCAAGGTGGACGTGGTCTACAATTGGGTTCGATGTACCAACCTTCTCAGCATCTTGGCTTAGCCATGTCTGACTCAAATTTGGGTATGTTGGCGGCACTGAATGCTTACACGAGAGGTGGTGGTTTGAATGTGAATTCTGATCACCAAACACATACTTTGGACCATCATCAACATCAACCTACTGAGAGTGGAGAAGATGCTCCTAATACTTCGCAATGA 1458 0.524 MELSDLQNNKQSRGNTHPHHHHPQQESSSSHSQQQQQHLVVPFDGRPSPFIMGSISIQPPSSSSSNSSSSSSSSASASASAPTPHLIDASLAIATRSDPPTLDSAKKTQIQQQLSISTAAAPVTTVNPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHTFHGALALAHHPYEDAFQHTALLGFHPQQQQQLMSADQIAEALPSGGESSENYMRKRYREDLFKDDDGEKYNNQQNESGDASSPKPFKTNLHLQKQQPPDGAAGGSSSGLLRPSNLLPATAMWAVAPATGATGGSGSTIWMLPVTAGAATATSESQTMWPFAAAAGGGGNATSTPTPLHFMPRFNLPGGLEFQGGRGLQLGSMYQPSQHLGLAMSDSNLGMLAALNAYTRGGGLNVNSDHQTHTLDHHQHQPTESGEDAPNTSQ. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05475 485 MobiDBLite consensus disorder prediction 1 81 - -
Seca5g05475 485 MobiDBLite consensus disorder prediction 54 81 - -
Seca5g05475 485 MobiDBLite consensus disorder prediction 27 41 - -
Seca5g05475 485 MobiDBLite consensus disorder prediction 97 143 - -
Seca5g05475 485 MobiDBLite consensus disorder prediction 254 332 - -
Seca5g05475 485 MobiDBLite consensus disorder prediction 455 485 - -
Seca5g05475 485 MobiDBLite consensus disorder prediction 273 294 - -
Seca5g05475 485 MobiDBLite consensus disorder prediction 295 332 - -
Seca5g05475 485 ProSiteProfiles TCP domain profile. 133 187 IPR017887 -
Seca5g05475 485 MobiDBLite consensus disorder prediction 101 129 - -
Seca5g05475 485 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 63 446 IPR005333 GO:0003700
Seca5g05475 485 Pfam TCP family transcription factor 132 281 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05475 Seca-Chr5 111579279 111580781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05475 130 439 TCP Transcription Factor Family AT1G35560 47.604 4.38e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca5g05475 TCP 1.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05475 - - vra:106776202 508.449