Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05474 ATGGAGACTCACTTCAATCACAATCTCTTCGAGAGGCGTCCCTTCCTCAAGTCCAAGGCCCCTGCCGTTAAATGGGTCAAAGAATGGGTTCCCCAAGATGTTGTAGCGACCGGCGGAAAGTGCATGCTCTTCAGATGGGTAACAGAGGATACCCTAAAGGCCTTGAGAGAAAAGGAAAAAGAGCCTTCAGCACCTGAGCCAGAACCCGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGAAGGCTGTGGAAAGACATTCATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATTTGTTTGCCACTATGAGGGATGTGGAAAGAAATTTCTTGACAGCTCAAAATTAAAAAGACATTTCCTAATCCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCTTGGATTTCAACCTGAGGTCTCACATGAAGACGCATTCGCAAGAGAACTATCATATATGCCCATACCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCATATTGCTTCTCATCATGAAAAGGTTGGGTACATTTCCTGTAATGCATCTGTGGATGTGCCAAAGTATACTCCGCCTGCAGAGAAGCCAACAAAAACTACTAAACCTTCTGGGGGAACTTATGGTTCGGCATCATCTGATCGCCCCTATGCATGCCCTTATGAAGGGTGTGAAAAGGCGTACATTCATGAATACAAGCTCAAACTCCATCTGAAGAGGGAGCATCCTGGCCACGATGAAAATGCTGTGCATGCTATGGCTAATGCTGTTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATGGCGGGAAACGGTCAAATGGTAAAAGTCAGAAGCAAAGTAAGCCGAAGCCAAACTTTAAGTTGCCTCCTTCAAAAATTGCCCGAAAAGGGCCAGCTCCAACTCCTGCCACTTTAAATGTGATGAAAAAACCTTGGCCAGTGAAAGAAGAAACTTACGATGAAGACAGCGAAGAAACTGAGGAGGATCATGACAATGTTGAAGATGGTTGGAGATATGCGGGAAACAACGAAGATGATGATGAGGAAACAGAATATGAGGACTGA 1128 0.4486 METHFNHNLFERRPFLKSKAPAVKWVKEWVPQDVVATGGKCMLFRWVTEDTLKALREKEKEPSAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKVGYISCNASVDVPKYTPPAEKPTKTTKPSGGTYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHDENAVHAMANAVDNEMDEASDQDAYGGKRSNGKSQKQSKPKPNFKLPPSKIARKGPAPTPATLNVMKKPWPVKEETYDEDSEETEEDHDNVEDGWRYAGNNEDDDEETEYED. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05474 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 235 265 IPR013087 -
Seca5g05474 375 MobiDBLite consensus disorder prediction 279 375 - -
Seca5g05474 375 FunFam zinc finger transcription factor YY1 163 194 - -
Seca5g05474 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Seca5g05474 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Seca5g05474 375 SUPERFAMILY beta-beta-alpha zinc fingers 120 163 IPR036236 -
Seca5g05474 375 MobiDBLite consensus disorder prediction 290 305 - -
Seca5g05474 375 Gene3D Classic Zinc Finger 77 102 - -
Seca5g05474 375 Gene3D Classic Zinc Finger 134 161 - -
Seca5g05474 375 SUPERFAMILY beta-beta-alpha zinc fingers 146 199 IPR036236 -
Seca5g05474 375 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Seca5g05474 375 MobiDBLite consensus disorder prediction 208 232 - -
Seca5g05474 375 FunFam zinc finger transcription factor YY1 77 102 - -
Seca5g05474 375 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Seca5g05474 375 SUPERFAMILY beta-beta-alpha zinc fingers 230 258 IPR036236 -
Seca5g05474 375 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Seca5g05474 375 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Seca5g05474 375 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Seca5g05474 375 FunFam Zinc finger protein 410 134 161 - -
Seca5g05474 375 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Seca5g05474 375 Gene3D Classic Zinc Finger 103 133 - -
Seca5g05474 375 Gene3D Classic Zinc Finger 163 194 - -
Seca5g05474 375 SMART c2h2final6 235 260 IPR013087 -
Seca5g05474 375 SMART c2h2final6 136 160 IPR013087 -
Seca5g05474 375 SMART c2h2final6 166 190 IPR013087 -
Seca5g05474 375 SMART c2h2final6 77 101 IPR013087 -
Seca5g05474 375 SMART c2h2final6 106 130 IPR013087 -
Seca5g05474 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 190 IPR013087 -
Seca5g05474 375 FunFam Zinc finger transcription factor YY1 210 276 - -
Seca5g05474 375 FunFam Putative zinc finger protein 143 103 133 - -
Seca5g05474 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Seca5g05474 375 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 354 - -
Seca5g05474 375 Gene3D Classic Zinc Finger 211 278 - -
Seca5g05474 375 MobiDBLite consensus disorder prediction 215 229 - -
Seca5g05474 375 ProSitePatterns Zinc finger C2H2 type domain signature. 237 260 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05474 Seca-Chr5 111562921 111566724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05474 8 361 C2H2 Transcription Factor Family AT4G06634 65.416 9.03e-149 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca5g05474 zf-C2H2 0.0089 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05474 - - zju:107412546 610.142