Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05472 ATGTCTAGTATTGACGTAAATTTGTCTGGGATAGTGTTTGAGCAAAATGTGGTTTACAAGGAGTGTAGGCACAACCTTGCAGCAAAACACGGTCTTGTTTTCCATGATGGATGCCTAGAGTTTGTCAAAGACACCGCTAATGATGCTATGTTGTGTGTTGCTTGTGGGTGTCACCAAAACTTTCACCGCAGATACATTGTTTTCAACCCCATAGCCTTACCTCAAGTAACAGACAACAATAGCCCAGAGCCACCAATGAAGAAGAGGAGGACAAGGTTCACACCGGAGGAAAGGAATCAATTGGTGACTTTTGCTGAGGGGTTTGGGTGGAAACCTCAAATGGCAAACAAGGAAGAAATCCAACGTTTCTGCTCAGAGATGGGAATCACGCACAAAATATTAATGGTTTGGATCAATAACAACTGTCATCGAGCAAAACACAAGAATTAA 450 0.4244 MSSIDVNLSGIVFEQNVVYKECRHNLAAKHGLVFHDGCLEFVKDTANDAMLCVACGCHQNFHRRYIVFNPIALPQVTDNNSPEPPMKKRRTRFTPEERNQLVTFAEGFGWKPQMANKEEIQRFCSEMGITHKILMVWINNNCHRAKHKN. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05472 149 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 65 IPR006456 -
Seca5g05472 149 Pfam ZF-HD protein dimerisation region 16 65 IPR006456 -
Seca5g05472 149 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 19 64 IPR006456 -
Seca5g05472 149 SUPERFAMILY Homeodomain-like 77 146 IPR009057 -
Seca5g05472 149 Gene3D - 75 147 - -
Seca5g05472 149 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 143 - -
Seca5g05472 149 NCBIfam homeobox domain, ZF-HD class 87 141 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05472 Seca-Chr5 111554961 111555464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05472 11 141 ZF-HD Transcription Factor Family AT1G69600 31.746 6.62e-23 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca5g05472 ZF-HD_dimer 5.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05472 - - gmx:102668663 150.984