Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05470 ATGCGAATTAGAACAATCATTCACAACATTGAGTTGAAACCGGGGCAAGGTGGGAAGCTGGTGCGAGCAGCTGGAACAAATGTGAAGATCTTGAAAGAGCCAACATCCGCATACTGTTTAATCCAACTTCCCTCTGGTGTTAAAAAATTGATTGATTCTCGATGCAGGGCCACCGTTGGTACCGTCTCTAATCCAACCCATGGAGATCGCAAGCTTAGAAAGGCTGGACATAGCCGATGGCTTGGTCGAAGACCGATTGTTCGAGAAGTGGCTATTTTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCATTACAGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAGGGTTTTCTTATTGATGATAGTGACGATATTGATGATAGTGACGATATCGACTGCGACCTTGATACGAAGCTGGAGCTTCTAACTATGATGAATGCGTTAACTATGGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTACATAATATGGATTCCAAACATTCATGATCTGGATATCATCCTCACTGTGGAGGAGAGGGTAAGAGCAAGATTAGTGGACGATGGGGGCGAGGATCTCGCACTCCTTGGGGCAAGCCTACTAAGAGTGGCTTCAAGACTGGTCCCCTCAAGCGCAGAAGGTGGGTAG 735 0.4435 MRIRTIIHNIELKPGQGGKLVRAAGTNVKILKEPTSAYCLIQLPSGVKKLIDSRCRATVGTVSNPTHGDRKLRKAGHSRWLGRRPIVREVAILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDSDDIDDSDDIDCDLDTKLELLTMMNALTMDMMPEIDRFYITLQFELAKAMSPYIIWIPNIHDLDIILTVEERVRARLVDDGGEDLALLGASLLRVASRLVPSSAEGG. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05470 244 SMART Ribosomal_L2_C_2 1 112 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca5g05470 244 Pfam Ribosomal Proteins L2, C-terminal domain 2 91 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca5g05470 244 Gene3D - 66 221 IPR027417 -
Seca5g05470 244 PANTHER PROTEIN YCF2-RELATED 91 202 - -
Seca5g05470 244 Gene3D - 1 62 IPR014722 -
Seca5g05470 244 SUPERFAMILY Translation proteins SH3-like domain 3 91 IPR008991 -
Seca5g05470 244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 201 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05470 Seca-Chr5 111544247 111544981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05470 5 92 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 37.234 6.73e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05470 - - mnt:24286671 191.045