Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05469 ATGAATATAAAGGAACAGAAAATAATACTAAAGAAAGAAAATTTCTTCAGTTACTCAAAAGGCAACCATAATCCAGATCAGCGCGTGGAATTCGAATGCATCAGACATTGCCACATCCTCCTTCCTACACCTAAATTCCCTTTTTCCTTTTTTTATTGTGTTGTTCAGAGAGAAAATGAACTGAACACAACAGAACATGCATTCCTCCCATTGCTACAAATGGCGTTGTGCCTTTCGTCATCTCCATGCATTCCAACACTAGATAACACGCTTCACAGTGAAGCTACACACCACTGTCTTTTTCACTTCTCTAACCCAAATTCCAAAGCCAAATCAATTTCTCCACTGATTTTGTTTGTTTGTGAAGGACGGTCAAATATCTACTCTCCTGCTTTACAAATGAACCCGTTTTCCTTCATTGATCAAAGATCCATGGCTAACATTTTGATATTCATATTCTTCTCCATCATCGTCTCCATATCACCCTCTTATGGATACGATCCGTTGGATCCTTTGGGCAACATCACCATCAAATGGGATTTCTTGGCTGATAATGGAGACACAGTCGATGTGAAGGTGTCAATATACAACTTGCAACTATTTCGCCATGTGGAAGAGCCTGGTTGGAAATTGGGTTGGGCTTGGAGGGGTAATGAGGTGATTTGGGCAATGTTGGGAGCAGAGGCTACAGAGCAAGGGAATTGCACAAGATTCAGGGGACAGAATAAACCCCATTGTTGTGAGAAGGAGCCAGTTATTATTGATCTCATGCCTGGAACCCCATACAACCTCCAGACTGCCAATTGCTGTAAAGGAGGGGTCCTAACATCCATCACTCAAGATCTTACCAAATATGGTGCCACCTTCCAGATGAATTATGCCAAATCATCACACTACATTCCAGGTGCCTCCAATTTTAGCATGCCTGAAAATTTCACCCTTGGAATTCCTGGTTATAGCTGTGGCACACCATTTCAAGTCCCACCAACCAAGTTCACCAAAGATGGACACCGATGGCAGCAAGTCTTAGAGACGTGGAATGTGACCTGTATTTACTCCCAGTTTCTAGCATCACCAGCCCCAAAATGCTGTGTCTCCTTGTCTTCATTCTATAATAGTTCCATTGTTCCTTGCCCCATATGCAGCTGTAATTGCCAAGGGCTACCAGGAGCAAATTGTGTGAATTCTGATAAGACTTCAGTGTTGCAACTGCCACAAGCGCATGAGGCTGAGACTGTGGTGAGGTGTACACATCACATGTGCCCCATTCGTGTTCACTGGCATGTGAAACAAAGTTATAAAGAGTATTGGAGGGTGAAGATCACAATCACAAATCTGAACTTGGTCAAAAACTACTCCCAGTGGAATTTGGTGGTTTTACACCCTAACTTGCGAAGTATAACCCAAGTTTTCAGTTTCAACTACCAGCCACTGCAAATTTATGGAAATCTCAATGATACAGGGATGTTTTGGGGGTTAGAGTACTACAATGACTTGTTGCTGGCACATGGGGACAATGGGAATGTACAAACAGAAGTGTTACTGCACAAAGATCGAGGAGAATTCACTTTCAAAGAAGGATGGACTTTTCCAAGAAAAATTTCATTTAATGGTGATGAGTGTGTCATGCCATCTCCTGACGCGTACCCTAGGCTCCCCAACACAGCTATGGCCACAACTACAACAACCCCTATCATTATTTTCTCCTCAATGTCACTGGCTATTCTCTCAATATTGGTCTAG 1743 0.4263 MNIKEQKIILKKENFFSYSKGNHNPDQRVEFECIRHCHILLPTPKFPFSFFYCVVQRENELNTTEHAFLPLLQMALCLSSSPCIPTLDNTLHSEATHHCLFHFSNPNSKAKSISPLILFVCEGRSNIYSPALQMNPFSFIDQRSMANILIFIFFSIIVSISPSYGYDPLDPLGNITIKWDFLADNGDTVDVKVSIYNLQLFRHVEEPGWKLGWAWRGNEVIWAMLGAEATEQGNCTRFRGQNKPHCCEKEPVIIDLMPGTPYNLQTANCCKGGVLTSITQDLTKYGATFQMNYAKSSHYIPGASNFSMPENFTLGIPGYSCGTPFQVPPTKFTKDGHRWQQVLETWNVTCIYSQFLASPAPKCCVSLSSFYNSSIVPCPICSCNCQGLPGANCVNSDKTSVLQLPQAHEAETVVRCTHHMCPIRVHWHVKQSYKEYWRVKITITNLNLVKNYSQWNLVVLHPNLRSITQVFSFNYQPLQIYGNLNDTGMFWGLEYYNDLLLAHGDNGNVQTEVLLHKDRGEFTFKEGWTFPRKISFNGDECVMPSPDAYPRLPNTAMATTTTTPIIIFSSMSLAILSILV. 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05469 580 Pfam COBRA-like protein 191 353 IPR006918 GO:0010215|GO:0016020
Seca5g05469 580 PANTHER PROTEIN COBRA 153 569 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05469 Seca-Chr5 111538059 111541030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05469 144 553 COBRA Gene Family AT1G09790 55.875 1.71e-164 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05469 - - lang:109329241 719.924