Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05468 ATGGCAAATACAAAGGGTTCATCAGGCATCAGAAACTTGATGTATTCTGGAAAGCATGCTCTGCTTCCTCCTAAAATCCCATTTCCTATGGTTTCCCAAGCATATGCTGAGTACATGCCAAAACCTACAATTGGTTCAAAGGTTGTGCAGAAACCCAGAGAGGGCAACCCACACCATCAACGGACTTCATCTGAGAGCCTTGTTATAGAGGATCAGCCTTCATGGCTTGATGATCTCCTTAGTGAGCCAGAGACACCTATCCGAAGGGGTGGACATCGGCGTTCATCAAGTGATTCTTTTGCATATGTAGATGCAACTAATGTTTCTAACATCGGTTATGCAGATCAGGATCAATGTAAATTTAGAAATTTGGCATCTATTCCATCTTGGTCATCTCAAGACTTTGATCACAGCAAAGATGCTCATCATATACCCTTCTATACAGAAACAAACTCAACAAAACTGAAAAATAGGGCATGGGACTCTTATCTAAATCCTGTGACCCATCCAGGTGGTTGTCTCTCTGGCAAAGACAATGTTGCTTTTCAGAGATCAGGATTGTCATGTCCACCGCATGAAGTAGAAGGGGTTCCATCCACTGCAAATGAAAAGCATGATTCAGTAGAATCTGGTGCACAGGATGCAAAATCATCTTCCGACAGAAAGGATGGATCAAATCCTAAGTCATCTGCTTCTGAAACAGATACAAAACGTGCTAAACAGCAATTTGCTCAACGTTCAAGGGTCCGTAAACTTCAATACATAGCTGAACTGGAAAGAAATGTACAAGGTTTACAGGCAGAAGGATCTGAAGTATCAGCTGAGCTTGAATTTCTTAACCAGCAGAATCTAATCCTTAGCATGGAGAATAAAGCACTCAAGCAACGCTTAGAAAGTTTAGCACAAGAACAGCTTATCAAATATTTGGAGCAGGAAGTATTGGAAAGAGAGATCGGAAGATTACGTGCACTGTATCAGCAGCAACAGCAGCCATCACAGCAACCATCAGCTAGCCATCGGCGTGCAAATAGCAGAGACCTTGAAACCCAGTTTGCAAACCTTTCTATAAAACACAAGGACACCAATTCAGGGCGTGATCCAGTGACAGGGGCACTTCGAATTTAG 1125 0.4258 MANTKGSSGIRNLMYSGKHALLPPKIPFPMVSQAYAEYMPKPTIGSKVVQKPREGNPHHQRTSSESLVIEDQPSWLDDLLSEPETPIRRGGHRRSSSDSFAYVDATNVSNIGYADQDQCKFRNLASIPSWSSQDFDHSKDAHHIPFYTETNSTKLKNRAWDSYLNPVTHPGGCLSGKDNVAFQRSGLSCPPHEVEGVPSTANEKHDSVESGAQDAKSSSDRKDGSNPKSSASETDTKRAKQQFAQRSRVRKLQYIAELERNVQGLQAEGSEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKYLEQEVLEREIGRLRALYQQQQQPSQQPSASHRRANSRDLETQFANLSIKHKDTNSGRDPVTGALRI. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05468 374 MobiDBLite consensus disorder prediction 185 245 - -
Seca5g05468 374 SMART brlzneu 233 292 IPR004827 GO:0003700|GO:0006355
Seca5g05468 374 MobiDBLite consensus disorder prediction 325 344 - -
Seca5g05468 374 CDD bZIP_plant_RF2 235 283 IPR044759 GO:0003700|GO:0006355
Seca5g05468 374 MobiDBLite consensus disorder prediction 46 68 - -
Seca5g05468 374 MobiDBLite consensus disorder prediction 353 374 - -
Seca5g05468 374 MobiDBLite consensus disorder prediction 325 340 - -
Seca5g05468 374 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 10 356 IPR044797 -
Seca5g05468 374 MobiDBLite consensus disorder prediction 198 242 - -
Seca5g05468 374 Coils Coil 248 303 - -
Seca5g05468 374 Gene3D - 237 289 - -
Seca5g05468 374 SUPERFAMILY Leucine zipper domain 244 286 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05468 Seca-Chr5 111533527 111537456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05468 73 307 bZIP Transcription Factor Family AT2G42380 30.980 5.84e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05468 - - gmx:100813098 567.385