Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05465 ATGGATAGTGAGGGTCACATTCCCCCAAAGCCTCCATGCTGCAAGGGTTCTGAAAATGAAGAAGCAGTTTTCTTGCATGGTGACTTGGATCTGTGGATATTAGAAGCAAAGTCTCTTCCCAATTTGGATTTTCCGACGGAAGCAGTGCGGAAATATTTCACGATGGGCAACAGTCGCTCGGGACTGAAGAAATACTCTGGCAAATACAAAATGATAACCAGTGATCCTTACGTCTCTGTCTGCCTCGCCGGTGCCACCGTTGCTCAAACCAGAGTCATTTCCAATTGTGAGAACCCTTTATGGGATGAGCATTTTCTTGTCCCTGTCGCTCACCCTGCTCGCAAATTGGAGTTCCTTGTCAAAGACGACGACATTCTTGGAGCCCAACTCATTGGTGTGGTCGACATTTCTGTCAACAAGATTCTCTCCGGAAATTTTATCAATGATTGGTTTCCCATCATTGGCCATTATGTAAGCTACTTGAGACCTTATCCTGAGCTGCATGTATATGTTCAGTTTAGACCTGTTACTGTTGGAGTGACCCCTCCTTTTCCAGAATCAGAGGATTATGAGGATCTGGCTGTTCCTAATACATATTTTCCTGTTCGAAAAGGAGGGAGTGTGACTCTATATCAAGATGCACATGTACCAGATGATGATAAGCTACCTGAAATTCCACTTGAGGGTGGAAAGCTATTTCAGCATGGTAAATGTTGGGAGGAGATATGCCATGCCATTTCCGAAGCTCACCACCTGATTTATATTATAGGGTGGTCAGTTTACCACCCAGTGAAGCTTATCAGAGAGCCAACAAAACCTTTGCCCTCTGGTGGAGACCTTTCACTTGGAGAGTTGTTGAAATACAAGTCACAAGAAGGGGTCCGTGTGGTTATGCTCATTTGGGATGACAAAACTTCCCATGACACTTTTCTTTTGAAAACAGAAGGTGTCATGCAGACTCATGATGAAGAAACTAAAAAGTATTTTAAACACTCTACTGTTAACTGCGTACTTGCTCCACGTTATGCAAGCAATAAGCTCAGTATTGTCAAGCAAAAGGTCGTGGGAACCCTTTTTACGCATCATCAGAAGTGTGTGCTTGTAGACACTCAAGCTTCTGGGAATAATAGGAAAATAACTGCTTTTATTGGTGGTTTGGATCTCTGTGATGGCAGATATGATACTCCTGACCATAGGCTTTTTGACGATCTAGATACTGTCTTTGAAAATGATTTTCACAATCCTACATTTCCAATGCAGACCAATTCGCACGGACCAAGAGAGCCATGGCATGACTTGCATTGCAGAGTTGAGGGTCCAGCTGCGTATGATATATTGACCAATTTTGAACAAAGATGGAAGAAAGCCAAAAAATGGCATGACTTCAGGCTCAAAAGGGTGACAAATTGGCATGATGATGCTTTGCTAAGCCTAGAGCGAATTTCATGGATTCTCACTCCATCTTCTGGTCCTGATGGTGATAAAGCTGTTCATGTAACTAATGAGGATGATCCTGAGAGCTGGCATGTGCAGGTATTTCGGTCAATAGATTCAGGATCGGTGAAGGGTTTTCCAAAGGATGTTCAAGAAGCAAAGGCTCAGAATCTTTTCTGTGGAAAGAATTTGAAAGTAGATAAAAGCATCCATGCTGCTTATGTGAAAGCAATAAGATCAGCTCAAAACTTTATATACATTGAGAATCAGTATTTTCTAGGATCCTCATATCACTGGTCTTCACACAAAAATGCAGTAGGTGCAAATCACTTGATTCCCACGGAATTGGCTTTAAAAATTGCCAACAAAATCAGTGCCAATGAACGTTTTTCTGTGTATATAGTTATACCAATGTGGCCAGAGGGGGTTCCCACTAGTGCTTCTGTTCAAGAAATTTTGTTCTGGCAGGGACAGACTATGTCTATGATGTACAAAATTGTTGCTGATGCACTTAAAAAGGCAGGTCTTTCTAGTGAGTATCATCCACAAGATTATCTCAACTTTTACTGTCTTGGAAAGCGCGAACCTCAATCCTCAGAAAGTCCATTAACACCACCATTTCACCCATTGGAAAACCGTGGTTTGGTTTCCGTTAAAAAGTCCAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGATGAATACGTAATCATGGGATCTGCAAATATTAACCAGAGATCCTTGGATGGTTCAAGAGACACAGAAATAGCTATCGGTGCTTATCAGCCAAAGTATACATGGAAAGAAAAGAATTCTCGTCCATATGGCCAGGTATATGGTTACCGAATGTCTCTATGGGCTGAGCACCTTGGCAGTCTTGATGAAACTTTTGTAGAACCACACAGCCTAGAATGTGTTAGATATGTCAACAACATAGCCAGACAAAACTGGGACGTCTATATATCTGAGGAAGGGAAGGAGATGAGGGGACATTTGCTGCCGTATCCAATTCAGGTCAGCCAAGATGGAAAAGTTAGTCCATTGCCAGAGTACGAATACTTTCCAGATGTTGGTGGTAAAGTTCTTGGTTCACCCAATTCTCTTCCGGATGCATTAACCACATGA 2571 0.4205 MDSEGHIPPKPPCCKGSENEEAVFLHGDLDLWILEAKSLPNLDFPTEAVRKYFTMGNSRSGLKKYSGKYKMITSDPYVSVCLAGATVAQTRVISNCENPLWDEHFLVPVAHPARKLEFLVKDDDILGAQLIGVVDISVNKILSGNFINDWFPIIGHYVSYLRPYPELHVYVQFRPVTVGVTPPFPESEDYEDLAVPNTYFPVRKGGSVTLYQDAHVPDDDKLPEIPLEGGKLFQHGKCWEEICHAISEAHHLIYIIGWSVYHPVKLIREPTKPLPSGGDLSLGELLKYKSQEGVRVVMLIWDDKTSHDTFLLKTEGVMQTHDEETKKYFKHSTVNCVLAPRYASNKLSIVKQKVVGTLFTHHQKCVLVDTQASGNNRKITAFIGGLDLCDGRYDTPDHRLFDDLDTVFENDFHNPTFPMQTNSHGPREPWHDLHCRVEGPAAYDILTNFEQRWKKAKKWHDFRLKRVTNWHDDALLSLERISWILTPSSGPDGDKAVHVTNEDDPESWHVQVFRSIDSGSVKGFPKDVQEAKAQNLFCGKNLKVDKSIHAAYVKAIRSAQNFIYIENQYFLGSSYHWSSHKNAVGANHLIPTELALKIANKISANERFSVYIVIPMWPEGVPTSASVQEILFWQGQTMSMMYKIVADALKKAGLSSEYHPQDYLNFYCLGKREPQSSESPLTPPFHPLENRGLVSVKKSRRFMIYVHAKGMIVDDEYVIMGSANINQRSLDGSRDTEIAIGAYQPKYTWKEKNSRPYGQVYGYRMSLWAEHLGSLDETFVEPHSLECVRYVNNIARQNWDVYISEEGKEMRGHLLPYPIQVSQDGKVSPLPEYEYFPDVGGKVLGSPNSLPDALTT. 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05465 856 ProSiteProfiles C2 domain profile. 8 151 IPR000008 -
Seca5g05465 856 Gene3D C2 domain 23 173 IPR035892 -
Seca5g05465 856 PIRSF PLD_plant 14 856 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Seca5g05465 856 Pfam PLD-like domain 691 740 IPR025202 -
Seca5g05465 856 Gene3D Endonuclease Chain A 231 474 - -
Seca5g05465 856 SMART C2_3c 28 150 IPR000008 -
Seca5g05465 856 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 25 176 IPR035892 -
Seca5g05465 856 Pfam Phospholipase D C terminal 776 846 IPR024632 -
Seca5g05465 856 SUPERFAMILY Phospholipase D/nuclease 531 787 - -
Seca5g05465 856 Gene3D Endonuclease Chain A 496 754 - -
Seca5g05465 856 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824
Seca5g05465 856 FunFam Phospholipase D delta 229 474 - -
Seca5g05465 856 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824
Seca5g05465 856 CDD C2_plant_PLD 22 174 - -
Seca5g05465 856 PANTHER PHOSPHOLIPASE D 20 845 IPR015679 -
Seca5g05465 856 Pfam Phospholipase D Active site motif 358 392 IPR001736 GO:0003824
Seca5g05465 856 Pfam C2 domain 27 153 IPR000008 -
Seca5g05465 856 SUPERFAMILY Phospholipase D/nuclease 201 462 - -
Seca5g05465 856 SMART pld_4 357 392 IPR001736 GO:0003824
Seca5g05465 856 SMART pld_4 702 729 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05465 Seca-Chr5 111507407 111513545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05465 12 855 Phospholipase D Gene Family (Wang group) AT4G11850 53.927 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05465 K01115 - gmx:100779740 1394.41