Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05459 ATGGAGAAGTACGAGCTGGTGAAGGATATAGGATCTGGGAATTTCGGGGTGGCCAGGCTCATGCGCCACAAAGAAACCAAAGAGCTTGTTGCCATGAAATTCATTGAACGAGGTCACAAGATTGATGAGAATGTTGCAAGGGAAATCATAAACCATAGAAGTCTTCGCCACCCGAATATTATTCGGTTCAAGGAGGTGGTTTTGACTCCCACACATCTTGGTATAGTGATGGAGTATGCAGCAGGTGGAGAGCTCTTTGAGCGAATTTGCACTGCTGGAAGATTCAGCGAAGATGAGGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGCAAATTTGCCATAGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGCCCTGCCCCACGGCTCAAAATATGTGATTTTGGTTATTCTAAGTCATCTCTGCTTCATTCTAGGCCTAAATCTACAGTGGGAACTCCAGCCTACATTGCGCCAGAGGTTCTTTCACGTAGAGAATATGATGGAAAGTTGGCAGATGTATGGTCGTGTGGAGTGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAGGACCAAGAGGATCCAAAAAATTTCAGGAAAACCATCAATCGAATTATGGCTGTTCAATACAAGATCCCAGACTATGTTCACATAACTCAAGACTGTAGACATCTGCTGTCTCGCATCTTTGTGGCAAATCCAGCCAGGAGAATCACCATTAAGGAAATAAAGTCCCACCCATGGTTTTTAAAGAACTTGCCTAGAGAATTGACAGAAGTGGCTCAAGCTGTCTACTACAGAAAAGAAAACCCAACCTTTTCTCTTCAGAGTATAGAAGACATTATGAATATTGTTGAGGAGGCCAAAAGTCCACCTCCAGCATCCGGGTCAATTGGAGGGTTTGGCTGGGGAGGAGAAGAAGAAGAAGAACAAGAAACAGAAACAAGAGAAGAACCAGAGGCAGAGGTGGAAGAAGATGAATATGAAAAGAGAGTCAAGGAGGCACAGGCTAGCGGAGAATTTCATGTCAGTTAA 1068 0.4419 MEKYELVKDIGSGNFGVARLMRHKETKELVAMKFIERGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLGIVMEYAAGGELFERICTAGRFSEDEARYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTINRIMAVQYKIPDYVHITQDCRHLLSRIFVANPARRITIKEIKSHPWFLKNLPRELTEVAQAVYYRKENPTFSLQSIEDIMNIVEEAKSPPPASGSIGGFGWGGEEEEEQETETREEPEAEVEEDEYEKRVKEAQASGEFHVS. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05459 355 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05459 355 PANTHER SERINE/THREONINE KINASE 2 301 - -
Seca5g05459 355 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca5g05459 355 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Seca5g05459 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Seca5g05459 355 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Seca5g05459 355 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05459 355 SUPERFAMILY Protein kinase-like (PK-like) 2 295 IPR011009 -
Seca5g05459 355 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Seca5g05459 355 CDD STKc_SnRK2 3 259 - -
Seca5g05459 355 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Seca5g05459 355 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05459 355 MobiDBLite consensus disorder prediction 316 336 - -
Seca5g05459 355 MobiDBLite consensus disorder prediction 299 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05459 Seca-Chr5 111479145 111482844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05459 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 43.704 2.80e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca5g05459 Pkinase 1.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05459 K14498 - gmx:100812259 638.262