Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05456 ATGTGTTGTCTCATTACTACTCAAATGAGGCAACGTCAAGCCAATTCAGCGGAGGGTGTTAAATGCAATGATAAAATTCCCCAGGTCAATTGGTTGCAGCATGCCAATGCTCATGAAAATTTCTCATGCCAAGCCAAATTTTTGAGCTCAAATTTTCTGTTCTCTGTCCCAACTAAGAAACCTTCCTATCAAGAACCAATCGCTGGGACTGGGAGGTTTGTATTCCAACAAAGTCAAAATATTCAGAGTTCACAAAGAGCACAAGTTGACAAGGCTTGGCTTGCTCTTTCAAGTCTACAGAATTCTAGTAGGAACTATGTCCAACCTGGAAAAACTGTTAAGGTTACTCCTCAGCTTCATGAAGAAAGGACAGCAACTTCCCTCCAAGGAAGCTATGAAAACAACAAGCTTAGCCATCCTGATGTCACCACTACTCCAGCTGTCATTAATCATAGTTCTCGGTTTTTGGATAGTTCAATGAACACTCATGCAAAGTACACAGGCCAAATCAATGAGTCTAGAAAATGCATAGCTGATGATATTGATGATGTTGATGACATACTTGAGAACATAGATATTGACCAAATTGTGGAGAAATACCAGTCTTCTTGCACTCCCCAGCCATCAGTATCCAAGCTTCCTCCTATTACACCAACTGCAGATAAAGATAATTTTGCTAGACAGGGGGATAATTTTTTGCCACCAGAGCTGTGCATAGTTTGCATTCACAATTACAAGTTAGGGCTTTGCCCTGAAGCAGCAGGTCATTTGCAAGAATTGAAGGATAATCTAATTTCTATCTCTAATGAACTGCTTGACAATGTTGAAAACCTCAGTTCTACAGAGATATCAAAGCTTCGTCAAGATAGGTCACAGTTGAATAAACAAATTCAGCAGCTTGAAACATATATTCATTCCAGAAATCTTGACGAGGAAAGACAAAAGTCACATTTTTCTGCATCTACAGCACCTCCTACATCTTTTGTCTATGAAACACCTCAGCAAACTTCCCTCCATAGTGGACTAAAGGGATATGATGCCCAGACTTATATGGATAATGGGAGATGTGGATCGTCATTCCAGTCTGTTTCATTCTTTTCTGTAGATAAGTATGGCATGCCATCAGGTCCAGTGGAGAGGGAAGCATTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGGGACAAAAGGTGGAGCAGCCAGGATTTTCCTTGGACAAAAGAGTTGGAGGTTAATAATAAAAAAGTATTTGGAAATCACTCATTTCGCCCCAACCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGGAAGAGTCTGACCTATCAGCTACCAGCTCTTATTTGTCCTGGCATAACATTAGTAATTTCTCCCCTAGTGTCCCTTATTCAAGATCAAATAATGCACCTGTTGCAGGCAAATATACCTGCTACCTACTTAAGTGCCAATATGGAATGGGCTGAACAGCAGGAGATCCTTAGAGAACTTAATTCTGATTATTGTAAATACAAGTTGTTATATGTGACACCCGAGAAGGTTGCCAGAAGTGATGTTCTTCTGCGACACTTGGAGAACTTACATGTTCGTGAGTTGCTTTCGAGGATTGTAATTGATGAGGCTCATTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGACTATCAGGGACTTGGTATGTTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAGGATGTTGTGCAAGCACTTAGTCTCGTTAACTGCATTGTTTTCCGACAAAGCTTTAATCGCCCAAACTTATGGTATTCTGTTGTCCCTAAGACCAAAAAGTGTGTGGAGGACATTGACAAATTCATAAGGGAAAACCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGACATAAATGTGCATTTTATCATGGGAGCATGGATCCTGCTCAACGTGCTTTTGTTCAAAAGCAATGGAGCAAAGATGAGATCAATATAATCTGTGCTACTGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCGCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAACGCTCATCATGTGTATTATATTATAGCTACAGTGATTATATACGTGTTAAGCATATGTTGAGTCAAGGAGCAATAGAGCAAAGCCCCATGACATCTGGATACAACCGATTAAATATGACAAATTCAGGAAGGATACTGGAAACAAACACTGAAAACCTTTTGCGAATGGTTAGTTATTGTGAAAGTGATGTTGATTGTCGGCGCCTTCTTCAGCTTGCTCATTTTGGGGAGAAGTTTGATTCTTCAACCTGTCACAAAACATGTGATAATTGCTTGAAGGTTACAAGTTTCATTGAAAAGGATGTCACAGAGATTGCAAAACAATTGGTTTGA 2553 0.3991 MCCLITTQMRQRQANSAEGVKCNDKIPQVNWLQHANAHENFSCQAKFLSSNFLFSVPTKKPSYQEPIAGTGRFVFQQSQNIQSSQRAQVDKAWLALSSLQNSSRNYVQPGKTVKVTPQLHEERTATSLQGSYENNKLSHPDVTTTPAVINHSSRFLDSSMNTHAKYTGQINESRKCIADDIDDVDDILENIDIDQIVEKYQSSCTPQPSVSKLPPITPTADKDNFARQGDNFLPPELCIVCIHNYKLGLCPEAAGHLQELKDNLISISNELLDNVENLSSTEISKLRQDRSQLNKQIQQLETYIHSRNLDEERQKSHFSASTAPPTSFVYETPQQTSLHSGLKGYDAQTYMDNGRCGSSFQSVSFFSVDKYGMPSGPVEREAFIPKIIEVNYIEGSGDKRWSSQDFPWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATYLSANMEWAEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRHLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGMLKQKFPNTPVLALTATATASVKEDVVQALSLVNCIVFRQSFNRPNLWYSVVPKTKKCVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMLSQGAIEQSPMTSGYNRLNMTNSGRILETNTENLLRMVSYCESDVDCRRLLQLAHFGEKFDSSTCHKTCDNCLKVTSFIEKDVTEIAKQLV. 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05456 850 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 633 778 IPR001650 -
Seca5g05456 850 Gene3D - 616 835 IPR027417 -
Seca5g05456 850 FunFam Bloom syndrome, RecQ helicase 616 836 - -
Seca5g05456 850 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 433 608 IPR014001 -
Seca5g05456 850 Coils Coil 283 303 - -
Seca5g05456 850 PANTHER DNA HELICASE RECQ FAMILY MEMBER 396 839 - -
Seca5g05456 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 759 IPR027417 -
Seca5g05456 850 CDD SF2_C_RecQ 616 748 - -
Seca5g05456 850 Pfam RecQ zinc-binding 750 832 IPR032284 -
Seca5g05456 850 CDD DEXHc_RecQ 416 615 - -
Seca5g05456 850 SMART ultradead3 421 624 IPR014001 -
Seca5g05456 850 Gene3D - 389 615 IPR027417 -
Seca5g05456 850 SMART helicmild6 658 739 IPR001650 -
Seca5g05456 850 Pfam Helicase conserved C-terminal domain 633 738 IPR001650 -
Seca5g05456 850 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 547 556 IPR002464 -
Seca5g05456 850 ProSiteProfiles Rhodanese domain profile. 648 690 IPR001763 -
Seca5g05456 850 Pfam DEAD/DEAH box helicase 427 595 IPR011545 GO:0003676|GO:0005524
Seca5g05456 850 FunFam ATP-dependent DNA helicase RecQ 398 615 - -
Seca5g05456 850 NCBIfam RecQ family ATP-dependent DNA helicase 417 848 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05456 Seca-Chr5 111462541 111472239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05456 647 770 Eukaryotic Initiation Factors Gene Family AT3G19760 24.409 8.22e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05456 K10901 - gmx:100800006 1379