Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05450 ATGGAGAGCAATTTCTGTGCATATAATCCTCAGCTAGCATCTAGCTTGAAGAAGAGTTACAAGAAGCACCAGCATGATCACTCAGAGCAGCATCATCATCTTAAAGAAGATGATGATATGTCTTTATCTTTCAATCTGAGGAATGTTTCAAAGCTCATTCTTCCTCCACTAGGTGTTTCTAAGCAGAATCCTGTAAACTCAAAAGGATGGATCATATCCCCAATGGATTCCAGATACAGGTGTTGGGAGAGTTTCATGGTTCTTCTGGTAGCTTACTCTGCATGGGTGTTTCCCTTTGAAGTTGCTTTCATGCACTCTTCTCCAAACAGGAAAATCTATATTGTGGACAATGTTGTTGATTTTTTCTTTGCTGTTGATATTGTTTTGACATTCTTCGTGGCTTATATTGATCCAACAACTCATCTACTAGTTCGAGATTCCAAAAAGATTGTAATAAGGTACTTGTCAACATGGTTCCTGATGGATTTGGCATCAACTATACCATATGAAGCAATAGGGTATTTGTTCACTGGTAAACACAAATTGGGTCTCCCATACTTCCTATTGGGCATGCTCAGATTATGGAGGATCAGACGGGTCAAGCAATTCTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCCGATGTGCTAGGCTTCTTTCTGTGACACTTTTTTCAGTTCATTGTGCTGGATGCCTCTATTACATGCTAGCTGATCGCTACCCTCACCAAGGAAAGACATGGATTGGAGCTGTGATCCCAAACTTCAGAGAGACAAGCCTTAGGATCAGATACATTTCAGCCATCTACTGGTCCATCACCACCATGACCACTGTAGGTTATGGTGACCTCCATGCTGTGAACACCATGGAAATGATCTTCATTATTTTCTACATGCTTTTCAACCTTGGCCTAACTGCTTACTTGATTGGCAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGCACCATGGAATTTAGAAATAGCATTGAAGCGGCATCAAACTTTGTGTGCCGAAATCGATTACCTCCAAGGTTAAGAGAGCAGATCCTGGCTTATATGTGTTTAAGATTTAAGGCAGAGAGCTTGAATCAGCATCAACTTATTGAACAGCTACCAAAGTCAATCTGCAAAAGCATCTGCCAGCATTTGTTTTATCCAACTGCAGAGAAAGTGTATCTCTTCAAAGGAGTCTCAAAAGAAATTCTTCTGTCCCTTGTTGCAAAAATGAAGGCAGAATACATACCACCTAGAGAGGATGTTATCATGCAAAATGAAGCGCCAGATGATGTTTACATTATAGTGTCCGGAGAAGTGGAGATCATAGATAGTGTAATGGAGAGAGAGAGGATTTTAGGGACTCTACATACAGGGGACATGTTTGGAGAAGTTGGTGCACTTTGTTGTAGACCTCAGAGCTTTACCTACAGAACCAAGACTCTCACACAGCTCTTGAGGCTCAAAACCAACACTCTTATAGAAGCCATGCAAGTAAAAAAAGAAGACAACATACAAATACTCAAAAATTTCCTTCAGCATTTCAAGCAGCTTAAGGATTTGAGTATCAGGGATTTGATGGTGGAGAATATGGAAGAAGAGGACCCTAACATGGCTGTGAACCTGTTAACGGTGGCCAGCACTGGCAATGCTGCTTTTCTTGAGGAGCTTCTAAGGGCAGGTTTGGATCCTGACATTGGAGACTCCAAAGGAAAAACCCCCTTGCACATAGCAGCATCAAATGGGCATGAAGAGTGTGTTAAAGTCTTACTCAAGTACACATGCAACATACATATAAGAGACATCAATGGTGACACTGCATTATGGGATGCAATAGCATCAAAACACTACTCCATATTCCGGATCCTCTACCAACTAGCTGCACTCTCTGATCCACACACAGCAGGAATTCTCCTATGTACAGCAGCAAAAAGAAATGATTTAACAGTAATGAATGAGCTTTTAAAGCAAGGATTAGACATTGACTCTAAAGATCGCCATGGAATAACAGCAATCCAAACTGCCATGGAAGAAAATCATGTGGACATGGTTCAGTTGCTTGTCATGAATGGAGCAGATGTATCTGATGTACATACTCATGAATTTTCTACATCCACCTTAAATGAAATGCTGCAGAAGCGTGAAATTGGGCATCTAATAACTGTAAAAGAGGTCATTCCCGGTGAGGTTGCATTAAGGGGGAGAAATCAAGAAGAGCAGGAGAAAATTCAGGGAAAATCTAATGGACAAATGTGTCCAAGAGTAAGCATATATAGAGGTCACCCTGCAATGAGAAGAGAAAAAGGTATCATGGAAGCTGGCAGGCTAATAAAGTTGCCTGATTCATTAGAGGAGCTCAAAACTATTGCAGGTGAAAAATTTGGGTTTGATGCAAGAGATGCAATGGTGACAAATGAAGAAGGATCAGAAATAGACTGTATTGATGTGATCAGAGATAATGATAAACTATTTTTTGTTGAATAG 2496 0.4067 MESNFCAYNPQLASSLKKSYKKHQHDHSEQHHHLKEDDDMSLSFNLRNVSKLILPPLGVSKQNPVNSKGWIISPMDSRYRCWESFMVLLVAYSAWVFPFEVAFMHSSPNRKIYIVDNVVDFFFAVDIVLTFFVAYIDPTTHLLVRDSKKIVIRYLSTWFLMDLASTIPYEAIGYLFTGKHKLGLPYFLLGMLRLWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSVHCAGCLYYMLADRYPHQGKTWIGAVIPNFRETSLRIRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLREQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFYPTAEKVYLFKGVSKEILLSLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEIIDSVMERERILGTLHTGDMFGEVGALCCRPQSFTYRTKTLTQLLRLKTNTLIEAMQVKKEDNIQILKNFLQHFKQLKDLSIRDLMVENMEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASNGHEECVKVLLKYTCNIHIRDINGDTALWDAIASKHYSIFRILYQLAALSDPHTAGILLCTAAKRNDLTVMNELLKQGLDIDSKDRHGITAIQTAMEENHVDMVQLLVMNGADVSDVHTHEFSTSTLNEMLQKREIGHLITVKEVIPGEVALRGRNQEEQEKIQGKSNGQMCPRVSIYRGHPAMRREKGIMEAGRLIKLPDSLEELKTIAGEKFGFDARDAMVTNEEGSEIDCIDVIRDNDKLFFVE. 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05450 831 Pfam Ion transport protein 80 328 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca5g05450 831 Pfam Cyclic nucleotide-binding domain 419 502 IPR000595 -
Seca5g05450 831 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515
Seca5g05450 831 CDD CAP_ED 399 512 IPR000595 -
Seca5g05450 831 Gene3D - 543 724 IPR036770 -
Seca5g05450 831 FunFam Potassium channel KAT2 387 523 - -
Seca5g05450 831 ProSiteProfiles Ankyrin repeat region circular profile. 671 699 - -
Seca5g05450 831 PANTHER POTASSIUM CHANNEL AKT1 45 830 IPR045319 GO:0005249|GO:0006813
Seca5g05450 831 ProSiteProfiles KHA domain profile. 758 831 IPR021789 -
Seca5g05450 831 PRINTS EAG/ELK/ERG potassium channel family signature 269 286 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g05450 831 PRINTS EAG/ELK/ERG potassium channel family signature 127 136 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g05450 831 PRINTS EAG/ELK/ERG potassium channel family signature 295 306 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g05450 831 PRINTS EAG/ELK/ERG potassium channel family signature 313 322 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g05450 831 PRINTS EAG/ELK/ERG potassium channel family signature 116 126 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g05450 831 SMART ANK_2a 641 667 IPR002110 GO:0005515
Seca5g05450 831 SMART ANK_2a 574 603 IPR002110 GO:0005515
Seca5g05450 831 SMART ANK_2a 671 700 IPR002110 GO:0005515
Seca5g05450 831 SMART ANK_2a 607 638 IPR002110 GO:0005515
Seca5g05450 831 SMART ANK_2a 541 570 IPR002110 GO:0005515
Seca5g05450 831 SMART cnmp_10 399 516 IPR000595 -
Seca5g05450 831 Gene3D - 80 322 - -
Seca5g05450 831 Gene3D Jelly Rolls 366 541 IPR014710 -
Seca5g05450 831 SUPERFAMILY Voltage-gated potassium channels 74 322 - -
Seca5g05450 831 SUPERFAMILY cAMP-binding domain-like 326 518 IPR018490 -
Seca5g05450 831 ProSiteProfiles Ankyrin repeat profile. 574 606 IPR002110 GO:0005515
Seca5g05450 831 FunFam Potassium channel KAT3 81 323 - -
Seca5g05450 831 ProSiteProfiles cAMP/cGMP binding motif profile. 399 518 IPR000595 -
Seca5g05450 831 SUPERFAMILY Ankyrin repeat 506 701 IPR036770 -
Seca5g05450 831 PRINTS Ankyrin repeat signature 575 590 IPR002110 GO:0005515
Seca5g05450 831 PRINTS Ankyrin repeat signature 687 701 IPR002110 GO:0005515
Seca5g05450 831 ProSiteProfiles Ankyrin repeat region circular profile. 574 605 - -
Seca5g05450 831 Pfam Ankyrin repeats (3 copies) 550 629 IPR002110 GO:0005515
Seca5g05450 831 Pfam KHA, dimerisation domain of potassium ion channel 757 829 IPR021789 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05450 Seca-Chr5 111380815 111386491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05450 1 579 Ion Channels AT4G22200 72.526 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05450 K21867 - gmx:100798422 1422.14