Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05445 ATGACTAAAGGCATTAATTTGTGTGAACAGGACATAAACATAACTGCTGCAAAGAATGAAAATGAAGTTCATGAATCTTCTGCTGTGGAGGACACAACTCCAGCTCTTGCAAATCCTGATGATACGAAGCAGGTTCGCTTGTATGTTTCCTCTCTTCCTGGAACCGGAGGAGGATTCATACCTGGGGGACGCCGCCGCTACCACCGCCGTGGAGCAGCAGTTCTGACAAGTGATCCAGATAGATTCTGCACAAATTATTATTGCAAGACAAGAAAAACTCCATTGTGGCGCAAGGGACCTCTGGGACCAAAGACTTTGTGCAATGCATGTGGCATTTATTACGTTAAGCATGTGAAGAGCAGGGGCAGTGGCATCCCTCAAGTGCCAATTGAAGAAGGTGATGCTTCTTCCTCCAGTGCTGCCAATGATGGTGCAGGTGCTCCTCCAACTTCTGTCCCAGCTGCAACTGATCCAAATGGGTCTTCAAATTTCTAA 495 0.4687 MTKGINLCEQDINITAAKNENEVHESSAVEDTTPALANPDDTKQVRLYVSSLPGTGGGFIPGGRRRYHRRGAAVLTSDPDRFCTNYYCKTRKTPLWRKGPLGPKTLCNACGIYYVKHVKSRGSGIPQVPIEEGDASSSSAANDGAGAPPTSVPAATDPNGSSNF. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05445 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 76 127 - -
Seca5g05445 164 SMART GATA_3 77 130 IPR000679 GO:0006355|GO:0043565
Seca5g05445 164 Gene3D - 76 132 IPR013088 GO:0006355|GO:0008270
Seca5g05445 164 CDD ZnF_GATA 82 126 IPR000679 GO:0006355|GO:0043565
Seca5g05445 164 ProSiteProfiles GATA-type zinc finger domain profile. 88 121 IPR000679 GO:0006355|GO:0043565
Seca5g05445 164 PANTHER OS01G0976800 PROTEIN 19 127 - -
Seca5g05445 164 MobiDBLite consensus disorder prediction 124 164 - -
Seca5g05445 164 Pfam GATA zinc finger 88 117 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05445 Seca-Chr5 111289469 111290228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05445 83 117 C2C2-Gata Transcription Factor Family AT3G20750 62.857 2.47e-11 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca5g05445 GATA 7.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05445 - - gmx:102663335 119.783