Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05443 ATGAAGACTGTTGTGGTGCTTCTTCTCTTGCTGCTGTTTCTATGCATGAGGAGCTATGCAGCCCCATCCCCTTCACCCTCCACACCCACATGCCCTATGGACCTCAATTATGTGCTGAGAATCCCATGGAATTCTTCTGCTTCATCCAAAAAAGAGGCAAACACAACCACTTGTTGCATAACACTTCTGTCCCTCTTTGGCATAGGACTTGCACAGCACCTGAAAGAGACCTCTCGTTTTCAGCTCCCAAACCTTCCCACCTCCAATTCATGCCTTGAAGACTTCCAATCCAAGCTCACTTCCCTCTCACTCCCCAACAATATCGTCAACTCCTGCTTTGATCCACTTCAGTTTGTTATCTCTCCCAATATATGTGCAGGAATTGAAACCATCCCAGATTGGACCAACAAGCTTGGTCAGAGCACACCACTCAACACTGCTTGTAGAGCAGATCTCACTGATCTTTCCCTCTGTGATGTGTGCCTGGCGGCGGGCTTACAGGTGAAACAGAAGCTTGTTTCCATTGATGGTAATGCTTCCCATTCCTTGGATTGCTTTTACTTTGCCATTCTTTATGCTGCTGGAATTGTGAATGAGTTTGGACCTGAAAGCAATGGTGCTGTCACTTGCATCTTTAGTCTACCTGTTCATTCACAAGTGGGTTCTGGGTCAAAGGGTCATCAGGCCCTTGTGTTTGGGTTGACAGGAGCTGGAGTTGCATTGCTTGTCATGTCTTCTTTGTTGGCACTGTATGTCTGGTATGACAGGAAGCGTAAGAAGTTTGATTTTGACCCTGAGGAACAAGGGTCTAGGCGGAGATTGAGACCCAATACAGGGTCGATTTGGTTCAAAATTGGGGAACTTGAGAAGGCTACTGATAATTTTTCACCTAAGAACTTCATAGGGCGAGGTGGGTTTGGGTTGGTTTTCAAGGGAACCTTGCCTGATGGGACAGTGGTTGCTGTGAAAAGGATTTTAGACTCTGATTTTCAAGGGGATGTTGAGTTTTGTAATGAGGTGGAAATTATTAGCAATCTGAAGCACCGTAATCTGGTGCCACTCAGAGGCTGTTGTGTGGAAGATGAGAGTGAGAATTATCATGACAAGGGAAGCCAAAGATATCTTGTTTATGATTACATGCCAAATGGCAACCTTGAAGACCATCTCTTTATATCATCATCAGACCCTGAAAAGGCAAAGAAATCATTGACCTGGCCTCAAAGAAAAAGCATAATCTTGGATGTGGCTAAGGGGTTGGCTTATTTGCATTATGGAGTTAAACCTGCAATTTATCACAGGGATATCAAAGCCACCAATATACTACTTGATGCAGATATGAGGGCAAGAGTTGCAGATTTTGGGCTTGCTAAACAAAGCAGGGAGGGTCAGTCTCATCTCACTACCAGAGTAGCTGGGACTCATGGATATCTAGCCCCAGAATATGCACTCTATGGTCAACTGACTGAGAAGAGTGATGTCTATAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGGAGGAAGGCTCTTGACTTGTCTTCATCAGGATCTCCAAGGGCATTCTTGATCACAGATTGGGCTTGGTCATTGGTGAAATCTGGGAAAATAGAAGAGGCTTTGGATGCTTCCCTTTTGAAAGATGAAAACTGTCCTAGTTCAAATCCTAAGAGCATAATGGAAAGGTTTTTGCTGGTAGGAATTTTATGTTCTCATGTAATGGTTGCTCTGAGGCCAACAATTGCTGATGCATTGAAGATGTTGGAAGGTGATATTGAGGTTCCTCAAATTCCAGATAGGCCTATGCCTCTTGGGCATCCTTCATTTTATAATAATACCGATGGGAACACTTTTAGCATATCCCCAGCATTAAGTGGCCCCAAATTGCAAACTGGAGACATGCTCAGGTAA 1908 0.4429 MKTVVVLLLLLLFLCMRSYAAPSPSPSTPTCPMDLNYVLRIPWNSSASSKKEANTTTCCITLLSLFGIGLAQHLKETSRFQLPNLPTSNSCLEDFQSKLTSLSLPNNIVNSCFDPLQFVISPNICAGIETIPDWTNKLGQSTPLNTACRADLTDLSLCDVCLAAGLQVKQKLVSIDGNASHSLDCFYFAILYAAGIVNEFGPESNGAVTCIFSLPVHSQVGSGSKGHQALVFGLTGAGVALLVMSSLLALYVWYDRKRKKFDFDPEEQGSRRRLRPNTGSIWFKIGELEKATDNFSPKNFIGRGGFGLVFKGTLPDGTVVAVKRILDSDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVEDESENYHDKGSQRYLVYDYMPNGNLEDHLFISSSDPEKAKKSLTWPQRKSIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGKIEEALDASLLKDENCPSSNPKSIMERFLLVGILCSHVMVALRPTIADALKMLEGDIEVPQIPDRPMPLGHPSFYNNTDGNTFSISPALSGPKLQTGDMLR. 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05443 635 FunFam probable receptor-like protein kinase At1g11050 256 379 - -
Seca5g05443 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Seca5g05443 635 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 380 595 - -
Seca5g05443 635 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Seca5g05443 635 Pfam SPARK 27 186 IPR043891 -
Seca5g05443 635 ProSiteProfiles Protein kinase domain profile. 295 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05443 635 SUPERFAMILY Protein kinase-like (PK-like) 275 588 IPR011009 -
Seca5g05443 635 Gene3D Transferase(Phosphotransferase) domain 1 380 595 - -
Seca5g05443 635 Pfam Protein kinase domain 298 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05443 635 PANTHER OS01G0750732 PROTEIN 49 595 - -
Seca5g05443 635 CDD STKc_IRAK 301 589 - -
Seca5g05443 635 SMART serkin_6 295 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05443 635 Gene3D Phosphorylase Kinase; domain 1 264 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05443 Seca-Chr5 111275161 111277110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05443 21 635 Receptor kinase-like Gene Family AT1G11050 66.236 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Seca5g05443 Pkinase 8.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05443 - - gmx:100806560 1073.15