Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05423 ATGTCTCTGCCAGGACGTCCTCGTATTGTAGTAAATGGGGTTCGAAGAACAAGAACCTTCCACTATTTCTGGTGTCTAAATTGCCAACGTACAGTGAGAATACCCTCTACAAATAGAGATGCCTCTTCTTCATGTCCCTATTGCTTCCATCAATTGCATTATGAGCTTGATATCTCAAGGCCAAGACTTCTCATGAACGTTCCTAATAACTTGGAACCTTCCCCTTCTACTCAGCTAATACATAGCTTGGCCCTCATGCTTGATCCATCTCTGAGAAGACAAAACAACCATTTGAACACAAGAACACAATGGGAAACAGAACATGAAGATAATAGTACAACTACAAATCCACAAGGTTGGATTACCCTCCGATTTGTGCCACCCACAAGGCCTATTTCCCCACCACAAAACTTTGTTCCTAATGCCACCCCTTTTGAGAATACACTAGATGATTTCATTGATGGGATGATTCAGAATAATAATAATAATAGACCAGGGCCACCTCCAGCATCATCTTCAGCCATTGCAGCCTTGCCAATGGTGAAAGTGACACAAGCACATTTGGCAAGTGACCCCAATTGTCCAATATGCAAAGATGAGTTTCAGCTTGATATGGAAGTGAGAGAGTTGCCATGCAAGCATTTCTATCATTCTGATTGCGTTGTGCCTTGGCTGTGCATGCATAATACTTGTCCTGTTTGCCGCTATGAGCTACAAAGTGCTGCTAATGCTAATGCTAATTACCTTTTCCAAAATGAGAATTATGAGCAAAGGTTTGGTTTTGAGGATGTTACAAGCAGCTTGAACTGGATTTGGAGCCAAGTAGCTTCCTTCAGGCCTATCCGTGCAGTCCTAGATTGGACACAGTCCTACTTTGATTTCCACGAAAATCGTGATAGTGGTGGTCGCAGAGGTAGCTCTTGGTGGCGAGCATTGCTTGTTTTATAG 948 0.4283 MSLPGRPRIVVNGVRRTRTFHYFWCLNCQRTVRIPSTNRDASSSCPYCFHQLHYELDISRPRLLMNVPNNLEPSPSTQLIHSLALMLDPSLRRQNNHLNTRTQWETEHEDNSTTTNPQGWITLRFVPPTRPISPPQNFVPNATPFENTLDDFIDGMIQNNNNNRPGPPPASSSAIAALPMVKVTQAHLASDPNCPICKDEFQLDMEVRELPCKHFYHSDCVVPWLCMHNTCPVCRYELQSAANANANYLFQNENYEQRFGFEDVTSSLNWIWSQVASFRPIRAVLDWTQSYFDFHENRDSGGRRGSSWWRALLVL. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05423 315 SMART ring_2 194 234 IPR001841 -
Seca5g05423 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 106 238 - -
Seca5g05423 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 241 IPR013083 -
Seca5g05423 315 SUPERFAMILY RING/U-box 174 241 - -
Seca5g05423 315 CDD RING-H2_RNF126-like 193 235 - -
Seca5g05423 315 FunFam E3 ubiquitin-protein ligase RING1-like 156 241 - -
Seca5g05423 315 Pfam Ring finger domain 193 235 IPR001841 -
Seca5g05423 315 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05423 Seca-Chr5 111094113 111095367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05423 1 294 C3H Transcription Factor Family AT1G68180 32.095 6.24e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05423 K11982 - gmx:100793656 424.861