Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05420 ATGGTTAAACACAACAACGTTATCCCAAATGGACACTTTCGGAAACACTGGCAGAACTATGTGAAGACATGGTTTAATCAACCTGCCAGGAAAACCCGCAGACGACTTGCAAGACAGAAGAAAGCTGTGAAAATCTTCCCTCGTCCAACTGCTGGGCCACTCCGTCCCATTGTTCATGGCCAGACTCTGAAATATAATATGAAAGTGAGGGCTGGTAGGGGCTTCTCTTTGGAAGAATTGAAGGCAGCTGGCATTTCAGATAAAGTTGCAGGGACTATAGGGATTGCTGTTGATCACAGAAGGAAGAACCGTTCTTTGGAGAGTCTTCAGGCTAATGTTCAGAGGCTGAAGACATACAAGGCCAAGTTGGTTGTCTTCCCAAGGCGATCTCGTAAATTTAAGAATGGTGACTCTGCTCCAGAGGAGCTAGCTACAGCAACACAGGTCCAGGGTCTGTACATGCCCATTGTACGCGAGAGGCCATCTGTGGAGTTTACAAAAGTTACTGATGAGATGAAGTCATTCAAGGCATACTATAAACTGCGTCTAGAGAGGACGAACCAGCGTCACATGGGTGCAAGGTTGAAGAAAGCTGCCGAGGCTGAGAAGGAAGAGAAAAAGTAA 624 0.4647 MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGISDKVAGTIGIAVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRSRKFKNGDSAPEELATATQVQGLYMPIVRERPSVEFTKVTDEMKSFKAYYKLRLERTNQRHMGARLKKAAEAEKEEKK. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05420 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Seca5g05420 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Seca5g05420 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Seca5g05420 207 Gene3D - 167 207 - -
Seca5g05420 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
Seca5g05420 207 FunFam 60S ribosomal protein L13 166 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05420 Seca-Chr5 111086131 111087553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05420 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 81.675 4.42e-119 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05420 K02873 - gmx:100805957 355.14