Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05405 ATGTTAAGTTGTGTTGTGTTATTTTTGGGTGACAGACAAAGGTTAGAGGTTAGAGCAGAGCAGAGAAGAATGGAGGGTGAACGCAAACGTTTGAGTACGCCACGGCTTGATAGGCGAAACGCCATGAAGAACATCGATTACCAAGTGGAAGATGATGGGGCGATGAATAATATGCTGAACAAAACGAGCTTCCGTGTGAAGGGAATTGATGGTGAATTCGACCATATATTCCGCAGCCTTGGCTTCTCTGGACCTGAAGACTTTGCCATCCCAACTTCAGCTTGGGAACAATCCCAAAAGGCTCGCTTTTCTTCTTTAATTCCCAACAAACCTGAAAAGGATATGAATATCTCTGAGAACAGAGATGGGGGGATCAAGGGTGTTAGGCCTCCGGTTCTGGCAATTGTTGCTAGTGATGGTGATGTTGGTGAAAAGGCTTTTTCTGATATGGTTGAAGAGTACTCCAACTCCTCCATGGATGATGGTTCCTTTAGACAGATTTTCGGGTCATGGCAAAAGGGCCACATTTTAGGGAAAGGCTCCTTTGGAACTGTCTATGAAGGCTTCACTGATGATGGGATATTTTTTGCAGTAAAGGAAGTTTCTTTGCTGGATGATGGAAGCCAAGGCAAACAGAGCATTTTTCAACTTCAGCAGGAAATATGTCTTTTGAGCCAATTCAAACACGACAACATAGTTCGATATATCGGTACTGACAAGGTATGTTGTTCTCTAGTTTTTTATTTGTATTTATATCTTTTTATTTCTCAGGACAATGACAAGCTGTATATCTTTCTTGAGCTTGTAACAAAAGGATCATTGGCAAGTCTCTATCAAAAATATCATTTAAAGGACTCTCAAGTTTCTGTATACACAAGACAAATTTTAAGTGGCTTGAAGTATCTTCATGATCGTAATGTGGTCCACAGGGACATCAAGTGTGCCAATATACTGGTTGATGCAAATGGGTCTGTCAAGCTTGCAGATTTTGGGCTGGCAAAGGCAACCAAATTGAATGATGTTAAATCAAGCAAAGGCTCCCCATACTGGATGGCCCCTGAGGTTGTTAACTTAAGGAACCGTGGTTATGGACTAGCAGCTGATATATGGAGCTTAGGATGTACAGTTTTAGAGATGTTGACCCGGCAACCTCCTTATTCTCATTTGGAAGGAATGCAAGCGTTATTTAGGATTGGGAGGGGTCAACCTCCACCTGTTCCAGAATCTTTATCAAAAGATGCCCGAGATTTCATTCTTAAGTGCTTACAAGTTAACCCAAATAAAAGACCAACTGCTGCTCAGCTATTGGATCATCCATTTGTAAAGAGACCAGTTTTATCTCCCATAAGTCCTGTTTCTCCACGTATTAATCTTATACTGTCTTGA 1386 0.4141 MLSCVVLFLGDRQRLEVRAEQRRMEGERKRLSTPRLDRRNAMKNIDYQVEDDGAMNNMLNKTSFRVKGIDGEFDHIFRSLGFSGPEDFAIPTSAWEQSQKARFSSLIPNKPEKDMNISENRDGGIKGVRPPVLAIVASDGDVGEKAFSDMVEEYSNSSMDDGSFRQIFGSWQKGHILGKGSFGTVYEGFTDDGIFFAVKEVSLLDDGSQGKQSIFQLQQEICLLSQFKHDNIVRYIGTDKVCCSLVFYLYLYLFISQDNDKLYIFLELVTKGSLASLYQKYHLKDSQVSVYTRQILSGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNRGYGLAADIWSLGCTVLEMLTRQPPYSHLEGMQALFRIGRGQPPPVPESLSKDARDFILKCLQVNPNKRPTAAQLLDHPFVKRPVLSPISPVSPRINLILS. 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05405 461 Gene3D Transferase(Phosphotransferase) domain 1 170 452 - -
Seca5g05405 461 FunFam Mitogen-activated protein kinase 1, putative, expressed 169 454 - -
Seca5g05405 461 Pfam Protein kinase domain 172 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05405 461 SMART serkin_6 171 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05405 461 ProSitePatterns Protein kinases ATP-binding region signature. 177 199 IPR017441 GO:0005524
Seca5g05405 461 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 121 445 - -
Seca5g05405 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Seca5g05405 461 ProSiteProfiles Protein kinase domain profile. 171 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05405 461 SUPERFAMILY Protein kinase-like (PK-like) 167 452 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05405 Seca-Chr5 110981429 110985012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05405 167 445 MAP Kinase Kinase Kinase AT4G08500 66.786 2.51e-126 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca5g05405 Pkinase 7.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05405 - K13414 gmx:100806902 627.476