Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05403 ATGGAGCAGCCACAGCTCTTAGTGGACGAAAACTTCCCCCTCTTCAAATCGACTCGCAAACCCTCCAAAAACCCCTCACCCTCCGCCAACAACAAAAATCCTAACTCCCACGCCAAAAACCCGAATTCTGATGCCGATAACATCAAAGACACCGCCCCAGCCGCCACGTTCGCCGATCTTGGACTGGCAGAATGGGCGGTGCAGACGTGCAACGCGCTCAGAATGCAGGTGCCGCGGCGCGTGCAGTGGAAGTGCATCCCGAGGGTCCTGGAGGGCCGCCATGTACTCGGCATCGACGAGACTGGCAGCGGCAAAACGGCGGCATTTGCCCTCCCCATCCTGCATCGCCTCGCTGAGCACCCGTTTGGCGTGTTCGCCCTTGTGGTGACTCCCACGCGCGAGCTTGCCTTCCAGCTTGCCGAGCAGTTCCGCGCCCTCGGCTCCTCCATCCGTCTCCGCATCGCCGTGGTGGTTGGCGGCATGGACATGCTCAAACAGGCCAGGGACTTGGTCGCCAGGCCTCACATTGTCATCGCCACCCCCGGGAGAATCAAGCTCTTGCTTGAGGATAATCCTGATATCCCTCCTATTTTCTCTAGGATTAAGTTCGTTGTCTTGGATGAAGCAGATCAAGTCCTGGATGTTGATTTTCAGGAGGAATTGAAATTTATCTTTCAATGCTTACCAGAAAATCGGCAAAACCTGTTCTTTTCCGCAACAACAACAAATAATCTGCAAAAGTTGCGTGAACGTTACCAGGATAAGCTGTATGTCTACGAGGCATATGAAGGCTTGAAAACAGTTGAAACCCTTAAGCAACAAGTTATATTTATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATCTTGTCTAAAATGGAAGAAATGGGCATTCGGTCTGCCATTGTATTTACCAACACACGCAGAGACTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATACAAAACACAGGTTCAGAGGCTCGAGGCACTCAATCAATTTAAATCAGGAAAGGTTTCTGTACTACTTACAACTGATGTTGCCTGCCGTGGTTTGGATATTCCTACAGTTGACCTTAATTATATTCATCGTGTAGGTCGTACTGCAAGAGCGGGTAGAGGAGGACTGGCTTTGAGCCTTGTCACCCAGTTTGGCTTCCACATCTGCATTAACAGTGACAAAAGGCCTTTAATGTGCCAATGCAGGCATTGTGTAAGGATCCCTATCTCAAATGGACAATAA 1275 0.4949 MEQPQLLVDENFPLFKSTRKPSKNPSPSANNKNPNSHAKNPNSDADNIKDTAPAATFADLGLAEWAVQTCNALRMQVPRRVQWKCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSSIRLRIAVVVGGMDMLKQARDLVARPHIVIATPGRIKLLLEDNPDIPPIFSRIKFVVLDEADQVLDVDFQEELKFIFQCLPENRQNLFFSATTTNNLQKLRERYQDKLYVYEAYEGLKTVETLKQQVIFIPKKVKDVYLMHILSKMEEMGIRSAIVFTNTRRDCHRLSLMLEVLDQEAAALYSYKTQVQRLEALNQFKSGKVSVLLTTDVACRGLDIPTVDLNYIHRVGRTARAGRGGLALSLVTQFGFHICINSDKRPLMCQCRHCVRIPISNGQ. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05403 424 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 86 259 IPR014001 -
Seca5g05403 424 Pfam Helicase conserved C-terminal domain 287 383 IPR001650 -
Seca5g05403 424 MobiDBLite consensus disorder prediction 1 49 - -
Seca5g05403 424 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 33 394 - -
Seca5g05403 424 Pfam DEAD/DEAH box helicase 80 248 IPR011545 GO:0003676|GO:0005524
Seca5g05403 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 255 IPR027417 -
Seca5g05403 424 SMART helicmild6 313 383 IPR001650 -
Seca5g05403 424 CDD SF2_C_DEAD 271 392 - -
Seca5g05403 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 395 IPR027417 -
Seca5g05403 424 Gene3D - 11 256 IPR027417 -
Seca5g05403 424 MobiDBLite consensus disorder prediction 17 49 - -
Seca5g05403 424 SMART ultradead3 74 274 IPR014001 -
Seca5g05403 424 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 286 424 IPR001650 -
Seca5g05403 424 CDD DEADc_DDX49 57 260 - -
Seca5g05403 424 Gene3D - 257 400 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05403 Seca-Chr5 110965297 110970452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05403 56 416 Eukaryotic Initiation Factors Gene Family AT3G13920 30.871 7.28e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05403 K14778 - gmx:100804060 586.26